Table 2.

List of SNPs associated with caecal Campylobacter colonisation level at 5dpi in the AIL population

Phenotype	SNP name	Chr	Position (bp)	P-value	-log10P
Continues	Affx-50646913	14	12330355	9.09 × 10−7	6.05
	Affx-50646912	14	12329892	1.87 × 10−6	5.73
	Affx-51436990	4	50482802	1.61 × 10−6	5.80
	Affx-51437092	4	50540614	3.07 × 10−6	5.51
	Affx-50712088	16	216322	2.23 × 10−4	3.65
Binary	Affx-51436990	4	50482802	1.31 × 10−7	6.88
	Affx-51437092	4	50540614	5.57 × 10−7	6.25
	Affx-51437128	4	50570363	6.14 × 10−7	6.21
	Affx-51437052	4	50519407	1.46 × 10-6	5.83
	Affx-51436951	4	50458809	2.20 × 10−6	5.65
	Affx-51436911	4	50436442	2.20 × 10−6	5.65
	Affx-51437087	4	50538487	2.40 × 10−6	5.62
	Affx-51437031	4	50505712	3.24 × 10−6	5.49
	Affx-50711743	16	159629	2.15 × 10−4	3.66

Continues: log-transformed Campylobacter load in caeca; Binary: (0/1); SNPs in bold: significant at genome-wide (P ≤ 1.75 × 10⁻⁷) or suggestive genome-wide (P ≤ 3.50 × 10⁻⁶) level after Bonferroni correction