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. 2016 Apr 18;16:89. doi: 10.1186/s12870-016-0776-6

Table 1.

Analyses of molecular variance (AMOVA) for three poplar species based on datasets for two markers

Grouping of regions Source of variation d.f. SS VC Percent variation Fixation index
rbcL haplotypes
 All samples Among groups 2 734.907 1.925 83.32 FCT = 0.8332
Among populations within species 43 65.524 0.101 4.38 FST = 0.877
Within populations 532 151.200 0.284 12.30 FSC = 0.2327
P. nigra Among populations 10 20.304 0.137 34 FST = 0.34
Within populations 135 35.799 0.265 66
P. × jrtyschensis Among populations 13 40.935 0.183 28.87 FST = 0.289
Within populations 201 90.535 0.45 71.73
P. laurifolia Among populations 20 4.285 0.009 6.29 FST = 0.063
Within populations 196 24.867 0.127 93.71
SSR markers
 All samples Among species (average) 2 1535.34 2.013 28.32 FCT = 0.2832
Among populations within species 42 678.942 0.470 6.62 FST = 0.3494
Within populations 1087 5026.09 4.624 65.06 FSC = 0.0923
P. nigra Among populations 10 130.972 0.376 9.22 FST = 0.0922
Within populations 271 1003.85 3.704 90.78
P. × jrtyschensis Among populations 13 215.384 0.369 6.15 FST = 0.0615
Within populations 418 2349.91 5.622 93.85
P. laurifolia Among populations 19 332.586 0.639 13.2 FST = 0.132
Within populations 398 1672.32 4.202 86.8
Nuclear genes
 All samples Among species (average) 2 313.331 1.5804 53.31 FCT = −0.03546
Among populations within species 29 28.155 −0.04908 −1.66 FST = 0.51659
Within populations 272 389.783 1.43303 48.34 FSC = 0.53314
P. nigra Among populations 9 82.674 −0.0513 −0.53 FST = −0.00534
Within populations 82 791.608 9.6537 100.53
P. × jrtyschensis Among populations 13 16.811 −0.892 −10.09 FST = −0.1009
Within populations 120 1167.883 9.732 110.09
P. laurifolia Among populations 7 28.565 −1.52901 −8.78 FST = −0.08785
Within populations 70 1325.383 18.934 108.78

d.f. degrees of freedom, SS sum of squares, VC variance components; FST, variance among populations; FSC, variance within populations within groups; FCT, variance among groups relative to total variance