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. 2016 Apr 18;17:31. doi: 10.1186/s12881-016-0293-3

Table 1.

Primary information for single-nucleotide polymorphisms (SNPs) genotyped

SNPs Chromosome position SNP location in gene Major > Minor allele Call rate HWE (control)
1 rs12778366a chr10:69313085 5′ upstream T > C 100 % 0.55
2 rs3758391a chr10:69313348 5′ upstream T > C 99.86 % 1
3 rs3740051a chr10:69313965 5′ upstream A > G 99.79 % 0.8
4 rs33957861 chr10:69316982 Intron C > T 99.93 % 0.9
5 rs7896005a chr10:69321131 Intron A > G 99.93 % 0.89
6 rs12413112 chr10:69321872 Intron G > A 100 % 1
7 rs11599176 chr10:69323781 Intron A > G 99.93 % 1
rs10823107a,b chr10:69330230 Intron
8 rs4746720a chr10:69346836 3′ untranslate region T > C 100 % 0.074

HWE indicates Hardy-Weinberg equilibrium

aTag SNPs selected from the HapMap database

bSNPs which failed in genotyping and was removed from the analysis