Table 3.
Results of C. trachomatis typing using the hr-MLST-6 scheme based on six polymorphic genes in comparison with ompA-typing and sexgroup
| Sequence type | Number of strains | ompA | CT046 | CT058 | CT144 | CT172 | CT682 | Cluster | ompA genovar (number of strains) | Sexgroupa (number of strains) |
|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 10 | 6 | 1 | 2 | 6 | 2 | 2 | VII | E (10) | Hetero (10) |
| 11 | 3 | 1 | 5 | 19 | 7 | 2 | 10 | D (3) | MSM (3) | |
| 16 | 1 | 6 | 7 | 19 | 14 | 2 | 1 | VI | E (1) | Hetero (1) |
| 27 | 1 | 9 | 10 | 6 | 10 | 1 | 6 | G (1) | Hetero (1) | |
| 30 | 1 | 12 | 10 | 7 | 1 | 3 | 8 | K (1) | MSM (1) | |
| 32 | 1 | 12 | 10 | 7 | 1 | 4 | 8 | K (1) | Hetero (1) | |
| 33 | 6 | 8 | 10 | 8 | 5 | 3 | 6 | II | G (6) | MSM (6) |
| 35 | 3 | 2 | 10 | 8 | 1 | 4 | 17 | D (3) | Hetero (3) | |
| 52 | 17 | 8 | 20 | 8 | 5 | 3 | 6 | II | G (17) | MSM (17) |
| 59 | 1 | 6 | 7 | 19 | 7 | 2 | 1 | VI | E (1) | Hetero (1) |
| 69 | 1 | 6 | 5 | 19 | 6 | 2 | 2 | E (1) | Hetero (1) | |
| 74 | 1 | 30 | 8 | 8 | 1 | 7 | 18 | B (1) | Hetero (1) | |
| 90 | 2 | 24 | 5 | 19 | 1 | 1 | 4 | IV | F (2) | Hetero (1), MSM (1) |
| 101 | 1 | 36 | 38 | 5 | 12 | 7 | 18 | III | I (1) | Hetero (1) |
| 109 | 18 | 1 | 5 | 20 | 5 | 2 | 34 | V | D (18) | MSM (18) |
| 110 | 1 | 24 | 1 | 2 | 7 | 2 | 4 | IV | F (1) | Hetero (1) |
| 137 | 1 | 8 | 10 | 8 | 22 | 4 | 6 | G (1) | Hetero (1) | |
| 143 | 1 | 28 | 44 | 13 | 17 | 13 | 28 | VIII | L2b (1) | MSM (1) |
| 153 | 2 | 6 | 35 | 19 | 7 | 2 | 1 | VI | E (2) | Hetero (2) |
| 165 | 1 | 35 | 12 | 5 | 1 | 9 | 8 | H (1) | Hetero (1) | |
| 171 | 2 | 6 | 49 | 19 | 7 | 2 | 1 | VI | E (2) | Hetero (2) |
| 172 | 1 | 6 | 1 | 2 | 7 | 2 | 2 | VII | E (1) | Hetero (1) |
| 194 | 3 | 1 | 5 | 6 | 5 | 2 | 34 | V | D (3) | MSM (3) |
| 232 | 2 | 20 | 5 | 19 | 1 | 4 | 18 | J (2) | Hetero (2) | |
| 240 | 1 | 24 | 5 | 19 | 12 | 1 | 4 | IV | F (1) | Hetero (1) |
| 265 | 1 | 10 | 10 | 4 | 1 | 3 | 7 | G (1) | Hetero (1) | |
| 270 | 1 | 8 | 10 | 5 | 12 | 3 | 8 | G (1) | Hetero (1) | |
| 272 | 1 | 36 | 10 | 5 | 12 | 24 | 18 | III | I (1) | Hetero (1) |
| 288 | 1 | 8 | 10 | 8 | 22 | 7 | 57 | G (1) | Hetero (1) | |
| 301 | 1 | 8 | 20 | 8 | 5 | 1 | 6 | II | G (1) | MSM (1) |
| 303 | 1 | 8 | 20 | 8 | 5 | 3 | 34 | II | G (1) | MSM (1) |
| 304 | 1 | 8 | 20 | 8 | 5 | 4 | 6 | II | G (1) | MSM (1) |
| 305 | 1 | 6 | 25 | 2 | 6 | 2 | 2 | VII | E (1) | Hetero (1) |
| 307 | 2 | 53 | 29 | 8 | 5 | 3 | 58 | I | J (2) | MSM (2) |
| 318 | 1 | 1 | 45 | 20 | 5 | 2 | 34 | V | D (1) | MSM (1) |
| 324 | 1 | 1 | 55 | 20 | 5 | 2 | 34 | V | D (1) | MSM (1) |
| 338 | 1 | 6 | 67 | 2 | 7 | 2 | 60 | E (1) | Hetero (1) | |
| 341 | 1 | 6 | 70 | 57 | 7 | 2 | 1 | E (1) | Hetero (1) | |
| 345 | 2 | 53 | 74 | 8 | 5 | 3 | 6 | I | J (2) | MSM (2) |
| 353 | 1 | 8 | 81 | 8 | 5 | 3 | 6 | II | G (1) | MSM (1) |
| 395 | 1 | 2 | 83 | 4 | 1 | 3 | 17 | D (1) | Hetero (1) | |
| 435 | 1 | 9 | 8 | 6 | 10 | 1 | 6 | G (1) | Hetero (1) | |
| 448 | 1 | 6 | 1 | 2 | 11 | 2 | 2 | VII | E (1) | Hetero (1) |
| 449 | 1 | 6 | 1 | 19 | 1 | 1 | 1 | E (1) | Hetero (1) | |
| 450 | 1 | 24 | 1 | 19 | 7 | 2 | 4 | IV | F (1) | Hetero (1) |
| 453 | 1 | 6 | 1 | 19 | 7 | 21 | 1 | VI | E (1) | Hetero (1) |
| 459 | 1 | 6 | 5 | 19 | 6 | 21 | 2 | E (1) | Hetero (1) | |
| 462 | 1 | 6 | 5 | 19 | 7 | 2 | 56 | E (1) | Hetero (1) | |
| 465 | 1 | 6 | 5 | 19 | 7 | 14 | 2 | E (1) | Hetero (1) | |
| 466 | 1 | 24 | 5 | 19 | 7 | 21 | 4 | IV | F (1) | Hetero (1) |
| 482 | 1 | 9 | 10 | 6 | 10 | 1 | 8 | G (1) | Hetero (1) | |
| 484 | 1 | 37 | 10 | 7 | 1 | 3 | 5 | I (1) | Hetero (1) | |
| 498 | 1 | 6 | 24 | 19 | 14 | 2 | 1 | VI | E (1) | Hetero (1) |
| 502 | 1 | 6 | 45 | 19 | 6 | 1 | 2 | E (1) | Hetero (1) | |
| 504 | 1 | 6 | 47 | 19 | 7 | 2 | 1 | VI | E (1) | Hetero (1) |
| 509 | 1 | 6 | 71 | 2 | 1 | 2 | 2 | VII | E (1) | Hetero (1) |
| 510 | 1 | 6 | 71 | 2 | 6 | 2 | 2 | VII | E (1) | Hetero (1) |
| 513 | 2 | 6 | 71 | 19 | 7 | 2 | 1 | VI | E (2) | Hetero (2) |
| 516 | 1 | 6 | 5 | 19 | 5 | 2 | 2 | E (1) | Hetero (1) | |
| 517 | 2 | 36 | 38 | 5 | 12 | 3 | 18 | III | I (2) | Hetero (2) |
| 100b | 3 | 36 | 10 | 5 | 12 | 7 | 18 | III | I (3) | Hetero (3) |
| 100c | 1 | 37 | 10 | 5 | 12 | 7 | 18 | III | I (1) | Hetero (1) |
| 108c | 9 | 53 | 29 | 8 | 5 | 3 | 6 | I | J (9) | MSM (9) |
| 12d | 13 | 24 | 5 | 19 | 7 | 1 | 4 | IV | F (13) | Hetero (12), MSM (1) |
| 135a | 1 | 20 | 10 | 5 | 12 | 4 | 18 | III | J (1) | Hetero (1) |
| 135b | 2 | 36 | 10 | 5 | 12 | 4 | 18 | III | I (2) | Hetero (2) |
| 13b | 1 | 24 | 5 | 19 | 15 | 1 | 4 | IV | F (1) | Hetero (1) |
| 148a | 2 | 24 | 5 | 19 | 7 | 2 | 4 | IV | F (2) | Hetero (1), MSM (1) |
| 205b | 1 | 20 | 10 | 6 | 22 | 4 | 8 | J (1) | Hetero (1) | |
| 20a | 1 | 2 | 10 | 4 | 1 | 4 | 17 | D (1) | Hetero (1) | |
| 220a | 1 | 12 | 10 | 4 | 1 | 3 | 8 | K (1) | Hetero (1) | |
| 281a | 1 | 20 | 10 | 8 | 1 | 4 | 18 | J (1) | Hetero (1) | |
| 281b | 1 | 63 | 10 | 8 | 1 | 4 | 18 | J (1) | Hetero (1) | |
| 56a | 9 | 6 | 1 | 19 | 7 | 2 | 1 | VI | E (9) | Hetero (7), MSM (2) |
| 58a | 1 | 22 | 27 | 13 | 17 | 13 | 28 | VIII | L2 (1) | MSM (1) |
| 58b | 16 | 28 | 27 | 13 | 17 | 13 | 28 | VIII | L2b (16) | MSM (16) |
| 77b | 1 | 31 | 5 | 19 | 7 | 2 | 37 | D (1) | Hetero (1) | |
| 91a | 1 | 24 | 5 | 19 | 5 | 2 | 4 | IV | F (1) | MSM (1) |
| 97b | 1 | 35 | 12 | 5 | 11 | 9 | 8 | H (1) | Hetero (1) |
a Hetero heterosexual, MSM men who have sex with men