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. 2015 Jul 15;5(1):11–21. doi: 10.1080/21623945.2015.1061723

Table 1.

Primer sequences and real-time PCR conditions used for gut microbiota analysis

Target group Primer sequence (5′-3′) Genomic DNA Standard PCR product Size (bp) AT Reference
Firmicutes ATG TGG TTT AAT TCG AAG CA
AGC TGA CGA CAA CCA TGC AC
Lactobacillus gasseri
ATCC 33323
126 60°C 38
Bacteroidetes CAT GTG GTT TAA TTC GAT GAT
AGC TGA CGA CAA CCA TGC AG
Bacteroides vulgatus
ATCC 8482
126 60°C 38
Lactobacillus GAG GCA GCA GTA GGG AAT CTT C
GGC CAG TTA CTA CCT CTA TCC TTC TTC
Lactobacillus gasseri
ATCC 33323
126 60°C 39
Enterococcus CCC TTA TTG TTA GTT GCC ATC ATT
ACT CGT TGT ACT TCC CT TGT
Enterococcus gilvus
ATCC BAA-350
144 61°C 40
Clostridium leptum GCA CAA GCA GTG GAG T
CTT CCT CCG TTT TGT CAA
Clostridium leptum
ATCC 29065
239 60°C 41
Bacteroides ATA GCC TTT CGA AAG RAA GAT
CCA GTA TCA ACT GCA ATT TTA
Bacteroides vulgatus
ATCC 8482
495 60°C 42
Prevotella CAC RGT AAA CGA TGG ATG CC
GGT CGG GTT GCA GAC C
Prevotella nigrescens
ATCC 33563
513 55°C 42
Bifidobacterium CGC GTC YGG TGT GAA AG
CCC CAC ATC CAG CAT CCA
Bifidobacterium longum subsp. Infantis ATCC 15697 244 60°C 39

AT, annealing temperature; bp, base pairs.