. 2016 Apr 19;11(4):e0153652. doi: 10.1371/journal.pone.0153652

Table 1. Primer and probes used for viral detection.

	Primer or probe	Sequence (5’to 3’)	Polarity	References
	VP2-F1	TCTGCAGACAGTTGAACCTATTAA	+
Rotavirus	VP2-F2^a	CAGACACGGTTGAACCCATTAA	+	[23]
	VP2-F3^a	TCGGCTGATACAGTAGAACCTATAAATG	+
	VP2-F4^a	TGTCAGCTGATACAGTAGAACCTATAAATG	+
	VP2-F5^a	TCAGCTGACACAGTAGAACCTATAAATG	+
	VP2-R1^a	GTTGGCGTTTACAGTTCGTTCAT	-
	VP2-R2^a	GTTGGCGTCTACAATTCGTTCAT	-
	VP2-P^b	6FAM-ATGCGCATRTTRTCAAAHGCAA	++
Norovirus Génogroupe I	JJV1NF ^a:	CCA TGT TCC GTT GGA TGC	+	[24]
	JJV1R ^a:	TCC TTA GAC GCC ATC ATC AT	-
	JJV1P ^b:	FAM-5’-TGT GGA CAG GAG ATC GCA ATC TC -3’-TAMRA	+
	RING-1b ^b :	FAM-5’-AGA TCG CGG TCT CCT GTC CA-3’-TAMRA	-
Norovirus Génogroupe II	QNIF2d ^a :	ATG TTC AGR TGG ATG AGR TTC TCW GA	+	[25]
	COG2R^a :	TCG ACG CCA TCT TCA TTC ACA	-
	QNIFS ^b :	FAM-5’-AGC ACG TGG GAG GGC GAT CG -3’-TAMRA	+
Astrovirus	AV1TR^a	CCG AGT AGG ATC GAG GGT	-	[26]
	AV2TR^a	GCT TCT GAT TAA ATC AAT TTT AA	+
	AVs^b	FAM-5'-CTT TTC TGT CTC TGT TTA GAT TAT TTT AAT CAC C-3'-TAMRA
Sapovirus	SaV124F^a	GAY CAS GCT CTC GCY ACC TAC	+	[27]
	SaV1Fa^a	TTG GCC CTC GCC ACC TAC	+
	SaV1245R^b	CCC TCC ATY TCA AAC ACT A	-
	SaV124TP^b	FAM-CCR CCT ATR AAC CA-MGB	-
*Aichivirus A*	AICHI 6261^a	ACA CTC CCA CCT CCC GCC AGT A	+	[28]
*Aichivirus A*	AICHI 6779^a	GGA AGA GCT GGG TGT CAA GA	-

^a Primer

^b Probe