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. 2016 Apr 19;11(4):e0153575. doi: 10.1371/journal.pone.0153575

Table 2. Allelic Diversity of Clinical M. tuberculosis Complex Isolates in Florida, 2009–2013.

MIRU-VNTR Locus Number of Isolates with Indicated MIRU Allele Allelic Diversity Index
0 1 2 3 4 5 6 7 8 9 10
MIRU 02 218 2146 49 1 0.20
MIRU 04 72 24 2026 101 27 122 23 9 4 6 0.29
MIRU 10 5 9 201 714 967 449 44 6 19 0.71
MIRU 16 5 116 412 1713 165 3 0.46
MIRU20 19 242 2148 5 0.20
MIRU 23 9 22 8 201 45 1438 664 19 8 0.56
MIRU24 3 2194 215 2 0.17
MIRU 26 2 13 215 160 374 1276 179 170 22 3 0.67
MIRU 27 6 22 51 2298 33 3 1 0.09
MIRU 31 1 318 1608 218 238 30 1 0.52
MIRU 39 6 44 1985 320 46 1 12 0.31
MIRU 40 16 333 387 1179 329 99 44 19 6 2 0.70
MIRU 424 25 213 1232 309 572 57 6 0.66
MIRU 577 5 1 150 804 1373 70 9 2 0.56
MIRU 1955 94 128 574 896 497 140 46 10 15 14 0.76
MIRU 2163b 28 626 450 484 431 243 57 46 47 2 0.82
MIRU 2165 1 33 681 1208 394 22 34 29 1 7 4 0.64
MIRU 2347 3 3 229 212 1944 22 1 0.34
MIRU 2401 3 391 874 8 1120 7 11 0.63
MIRU 2461 4 214 1951 49 62 37 88 9 0.34
MIRU 3171 4 132 135 2034 41 67 1 0.28
MIRU 3690 25 173 563 1313 210 77 17 26 6 4 0.64
MIRU 4052 57 246 1119 900 87 3 2 0.63
MIRU 4156 116 6 26 103 247 389 410 725 292 100 0.82

Notes: Indeterminate (“_”) and ambiguous sites (“%“) were removed from the calculations for genetic diversity; the total sample used is n = 2,414.