Table 2. Allelic Diversity of Clinical M. tuberculosis Complex Isolates in Florida, 2009–2013.
MIRU-VNTR Locus | Number of Isolates with Indicated MIRU Allele | Allelic Diversity Index | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ||
MIRU 02 | 218 | 2146 | 49 | 1 | 0.20 | |||||||
MIRU 04 | 72 | 24 | 2026 | 101 | 27 | 122 | 23 | 9 | 4 | 6 | 0.29 | |
MIRU 10 | 5 | 9 | 201 | 714 | 967 | 449 | 44 | 6 | 19 | 0.71 | ||
MIRU 16 | 5 | 116 | 412 | 1713 | 165 | 3 | 0.46 | |||||
MIRU20 | 19 | 242 | 2148 | 5 | 0.20 | |||||||
MIRU 23 | 9 | 22 | 8 | 201 | 45 | 1438 | 664 | 19 | 8 | 0.56 | ||
MIRU24 | 3 | 2194 | 215 | 2 | 0.17 | |||||||
MIRU 26 | 2 | 13 | 215 | 160 | 374 | 1276 | 179 | 170 | 22 | 3 | 0.67 | |
MIRU 27 | 6 | 22 | 51 | 2298 | 33 | 3 | 1 | 0.09 | ||||
MIRU 31 | 1 | 318 | 1608 | 218 | 238 | 30 | 1 | 0.52 | ||||
MIRU 39 | 6 | 44 | 1985 | 320 | 46 | 1 | 12 | 0.31 | ||||
MIRU 40 | 16 | 333 | 387 | 1179 | 329 | 99 | 44 | 19 | 6 | 2 | 0.70 | |
MIRU 424 | 25 | 213 | 1232 | 309 | 572 | 57 | 6 | 0.66 | ||||
MIRU 577 | 5 | 1 | 150 | 804 | 1373 | 70 | 9 | 2 | 0.56 | |||
MIRU 1955 | 94 | 128 | 574 | 896 | 497 | 140 | 46 | 10 | 15 | 14 | 0.76 | |
MIRU 2163b | 28 | 626 | 450 | 484 | 431 | 243 | 57 | 46 | 47 | 2 | 0.82 | |
MIRU 2165 | 1 | 33 | 681 | 1208 | 394 | 22 | 34 | 29 | 1 | 7 | 4 | 0.64 |
MIRU 2347 | 3 | 3 | 229 | 212 | 1944 | 22 | 1 | 0.34 | ||||
MIRU 2401 | 3 | 391 | 874 | 8 | 1120 | 7 | 11 | 0.63 | ||||
MIRU 2461 | 4 | 214 | 1951 | 49 | 62 | 37 | 88 | 9 | 0.34 | |||
MIRU 3171 | 4 | 132 | 135 | 2034 | 41 | 67 | 1 | 0.28 | ||||
MIRU 3690 | 25 | 173 | 563 | 1313 | 210 | 77 | 17 | 26 | 6 | 4 | 0.64 | |
MIRU 4052 | 57 | 246 | 1119 | 900 | 87 | 3 | 2 | 0.63 | ||||
MIRU 4156 | 116 | 6 | 26 | 103 | 247 | 389 | 410 | 725 | 292 | 100 | 0.82 |
Notes: Indeterminate (“_”) and ambiguous sites (“%“) were removed from the calculations for genetic diversity; the total sample used is n = 2,414.