Table 2. phiAxp-3 gene annotations.

ORFs	Start	End	Strand	Length (aa)a	Vs			Function	Conserved Protein Domain Family
					JWAlpha	JWDelta	N4
ORF01	141	461	+	106	73	73	51
ORF02	640	1065	+	141	67	67	43
ORF03	1229	1606	+	125
ORF04	1628	1774	+	48
ORF05	1767	1937	+	56
ORF06	1934	2284	+	116	41	41
ORF07	2281	2571	+	96	28	28
ORF08	2574	2759	+	61
ORF09	2752	3057	+	101	72
ORF10	3061	3300	+	79	50	50
ORF11	3297	3623	+	108	55
ORF12	3620	3739	+	39
ORF13	3736	4119	+	127	71	73	55
ORF14	4142	4969	+	275	80	80	62	RNA polymerase 1	PHA00452; COG5108
ORF15	4966	5253	+	95
ORF16	5256	5435	+	59
ORF17	5462	6676	+	404	83		55	RNA polymerase 2	pfam00940; PHA00452
ORF18	6814	7587	+	257	49	41
ORF19	7674	7901	+	75	54	45
ORF20	7916	8689	+	257	42	44
ORF21	8689	9027	+	112	79	80	64	HNH endonuclease	pfam13392
ORF22	9024	9290	+	88
ORF23	9340	9594	+	84	44	44
ORF24	9578	9841	+	87	74	76
ORF25	9823	10278	+	151	66	77
ORF26	10275	10463	+	62	64
ORF27	10465	10686	+	73	39	40
ORF28	10704	11786	+	360	73	73	51
ORF29	11789	11974	+	61
ORF30	11978	12340	+	120	46	46
ORF31	12325	13482	+	385	80	80	57
ORF32	13479	13976	+	165	74	75	58	dCTP deaminase	cd07557; COG0717; PRK00416; TIGR02274; PHA01707
ORF33	14274	14435	+	53	53	53
ORF34	15442	15765	+	107	70	69
ORF35	15776	16309	+	177	24	27
ORF36	16309	16509	+	66	47
ORF37	16724	17191	+	155	67
ORF38	17188	18099	+	303	78		54	Thymidilate synthase	pfam02511; TIGR02170; COG1351; PRK00847
ORF39	18162	20717	+	851	61	61	28	rIIAlike protein	cd00075; pfam13589; smart00387; COG1389; PRK04184; TIGR01052
ORF40	20727	22319	+	530	69	68	33	rIIBlike protein
ORF41	22695	23153	+	152	87	86	45	NTP pyrophosphohydrolase	cd11530; COG4696; pfam01503
ORF42	23208	24515	+	435	79	80	56	DNA helicase	pfam13604; pfam13538; pfam13086; COG0507; TIGR01448; PRK13826; PRK10875
ORF43	24525	25046	+	173	65	65	40
ORF44	25055	27715	+	886	81	81	63	DNA polymerase I	pfam00476; cd08637; smart00482; smart00474; COG0749; TIGR00593; PRK05755
ORF45	27712	28116	+	134	66	66	49
ORF46	28119	28394	+	91	71	75	59
ORF47	28440	29432	+	330	82	82	58
ORF48	29429	31576	+	715	91	91	76	DNA primase	pfam08708; smart00942
ORF49	31640	32407	+	255	85	85	67
ORF50	32450	33217	+	255	64	64	49	ssDNA binding protein
ORF51	33368	33781	+	137	83		52
ORF52	33792	34235	+	147	63		58
ORF53	34252	34431	+	59	58
ORF54	34464	44750		3428	82	82	55	RNA polymerase	PRK10811; COG0810
ORF55	44849	46900		683	70	70	34	structural protein
ORF56	46913	47446		177	69		68	structural protein
ORF57	47459	50110		883	54	54	46
ORF58	50114	51013		299	77		65	putative tail protein
ORF59	51090	51806		238	68	68	55
ORF60	51873	53096		407	94	95	84	major capsid protein	TIGR04387
ORF61	53109	54413		434	79		53	tape measure protein
ORF62	54439	54813		124	54		39
ORF63	54824	57106		760	86	87	66	portal protein
ORF64	57162	57485		107
ORF65	57608	58240		210	90	93	62	Nacetylmuramidase	pfam05838; pfam09374; COG3926
ORF66	58203	58490		95	85	76	31	putative holin protein
ORF67	58469	58804		111	68	63	55
ORF68	58909	60186		425			69
ORF69	60206	64393		1395			54	160 kDa protein
ORF70	64462	66606		714	40	40	39
ORF71	66610	67314		234	61	61	54
ORF72	67322	68932		536	87	87	76	terminase subunit A	TIGR01630; pfam03237
ORF73	68925	69605		226	90	88	65
ORF74	69649	70116		155	65	66
ORF75	70113	70304		63
ORF76	70440	70751	+	103	29	29	30
ORF77	71010	71411	+	133
ORF78	71401	71718	+	105
ORF79	71715	71999	+	94	46
ORF80	71996	72328	+	110	42

^aamino acids.