Table 3.
Reads showing differential expression between cultivars and/or treatments
| Libraries | EdgeR DEG (% of total clusters) | DEseq DEG (% of total clusters) | Total DEG (% of total clusters) | Up-regulated clusters (% of total clusters) | Down-regulated clusters (% of total clusters) |
|---|---|---|---|---|---|
| I59-D/I59-C | 209 (0.49 %) | 176 (0.41 %) | 226 (0.52 %) | 165 (0.38 %) | 61 (0.14 %) |
| RUB-D/RUB-C | 323 (0.75 %) | 306 (0.71 %) | 343 (0.80 %) | 251 (0.58 %) | 92 (0.21 %) |
| RUB-C/I59-C | 173 (0.40 %) | 169 (0.39 %) | 184 (0.43 %) | 104 (0.24 %) | 80 (0.19 %) |
| RUB-D/I59-D | 392 (0.91 %) | 433 (1.00 %) | 490 (1.14 %) | 320 (0.74 %) | 170 (0.39 %) |
Differentially expressed genes (DEG) were obtained with the R/Bioconductor packages DEseq and EdgeR. Total DEG values mean the union of DEseq and EdgeR results. The calculation of percentage was based on total of clusters (43,087 clusters). Cultivars (RUB Rubi and I59: IAPAR59) of C. arabica and treatments (C control and D drought) are indicated