Table 2.
Compounds | Binding affinity (kcal/mol) |
Protein-ligand interactions | ||
---|---|---|---|---|
Hydrogen bond | Electrostatic | Hydrophobic | ||
K-26 | −8.2 |
ALA356:
OC
ALA356: NH ASP358 : OC GLU384:OPO T Y R 5 2 3 : O P O |
Zn 2+ : OPO | TRP357:pi-sigma HIS387 : pi-pi HIS410:pi-pi VAL518:pi-sigma |
Peptide1 | - 9.5 | GLN281:OC(Glu3)
GLU411:OH(Gly4) T Y R 5 2 3 : O H (Gly4) ALA356: NH (Gly7) TYR360:OC(Gly7) GLU403:NH(Arg9) GLY404:NH(Arg9) |
GLU376:N
+
(Gly1)
ASP453:N + (Pro2) GLU411:N + (Pro5) GLU403:N + (Arg9) ARG522:O − (Arg9) Zn 2+ : OH (Gly4) |
HIS383:pi-sigma(Pro2)
HIS387 : pi-sigma (Pro5) PHE570:pi-sigma(Arg9) |
Peptide2 | −9.3 | GLU162:NH(Gly1)
ASP377:NH(Gly1) CYS370:NH(Gly1) ALA354:OC(Gly1) LYS511:OC(Glu2) THR282:OH(Thr3) HIS353:NH(Gly7) ASN66:NH(Ala11) ARG124:OC(Ala12) TYR360:NH(Ala15) TYR394:NH(Arg18) ASP358 : NH (Arg18) TYR360:NH(Arg18) |
GLU162:N
+
(Gly1)
ASP377:N + (Gly1) LYS511:O − (Glu2) ASP358:N + (Arg18) Zn 2+ : OC (Ala6) |
HIS383:pi-sigma(Pro5)
HIS410:pi-cation (Arg18) |