Table 3. Genes with RR value > 10.
| Position | Peak start | Avg depth | rnc+ ΔrnjA reads | Δrnc ΔrnjA reads | Peak RR | Operon position | Antisense overlap | |
|---|---|---|---|---|---|---|---|---|
| 1 | BSU00090,guaB | 16 250 | 112.37 | 409.31 | 126.56 | 11.3 | monocistronic | |
| 2 | BSU00400,yabE | 49 142 | 219.45 | 23.04 | 12.26 | 16.5 | monocistronic | S25 |
| 3 | 5′_BSU00490,spoVG | 55 847 | 112.38 | 157.86 | 25.73 | 11.1 | monocistronic | |
| 4 | BSU01060,ybxB | 121 313 | 142.38 | 2.17 | 3.28 | 39.5 | ||
| 5 | BSU01260,rplN | 140 709 | 134.50 | 88.14 | 197.09 | 10.1 | ||
| 6 | 5′_BSU02040,ybdN | 224 045 | 505.79 | 0.90 | 1.43 | 14.4 | ||
| 7 | BSU03220,ycgO (putP) | 348 421 | 148.67 | 8.61 | 1.24 | 63.6 | 3 | S117 |
| 8 | BSU03480,srfAA | 377 519 | 123.54 | 20.75 | 26.72 | 36.7 | 1 | |
| 9 | BSU03670,dtpT | 417 038 | 186.39 | 17.46 | 75.24 | 14.1 | monocistronic | |
| 10 | BSU03830,yclQ | 435 313 | 116.07 | 25.41 | 18.56 | 67.1 | 4 | |
| 11 | 3′_BSU07560,pel | 829 226 | 221.39 | 3.52 | 10.28 | 11.1 | monocistronic | |
| 12 | BSU09640,yhdY | 1 039 831 | 362.95 | 3.09 | 8.79 | 12.0 | ||
| 13 | BSU11590,yjbL | 1 236 790 | 114.19 | 2.67 | 2.99 | 20.0 | ||
| 14 | BSU12100,yjeA | 1 281 630 | 218.17 | 6.47 | 23.37 | 12.3 | monocistronic | |
| 15 | BSU13490,ykrL (htpX) | 1 415 027 | 384.04 | 21.01 | 46.98 | 11.1 | ||
| 16 | 5′_BSU14629,ykzW | 1 534 091 | 131.12 | 1.35 | 7.71 | 13.9 | ||
| 17 | BSU14629,ykzW<>BSU14630,speA | 1 534 171 | 1553.17 | 11.0 | ||||
| 18a | BSU15140,mraW | 1 581 006 | 325.37 | 240.06 | 27.30 | 17.3 | 2 | |
| 18b | BSU15140,mraW | 1 581 170 | 996.75 | 17.8 | ||||
| 19 | BSU15210,spoVE | 1 590 701 | 272.95 | 32.89 | 56.27 | 13.4 | 4 | |
| 20 | BSU15600,cysC<>BSU15610,sumT | 1 633 979 | 203.72 | 151.9 | 4, 5 | |||
| 21 | BSU15710,priA | 1 645 900 | 124.22 | 6.20 | 3.07 | 150.4 | ||
| 22 | BSU15910,fabG | 1 664 924 | 113.09 | 22.84 | 27.53 | 14.0 | 4 | |
| 23 | BSU16550,dxr | 1 723 065 | 459.63 | 9.55 | 14.64 | 10.8 | ||
| 24 | BSU17450,glnR | 1 878 240 | 754.45 | 21.72 | 36.29 | 17.5 | 1 | |
| 25 | BSU17460,glnA | 1 878 611 | 125.00 | 82.86 | 130.06 | 12.1 | 2 | |
| 26 | BSU18080,yneT | 1 932 721 | 148.30 | 4.03 | 14.47 | 19.0 | ||
| 27a | BSU18380,iseA | 2 002 730 | 165.90 | 27.50 | 31.30 | 81.9 | monocistronic | |
| 27b | BSU18380,iseA | 2 002 958 | 118.29 | 26.9 | ||||
| 27c | 3′_BSU18380,iseA | 2 003 024 | 462.58 | 12.6 | ||||
| 28 | BSU19650,yodM | 2 137 281 | 144.57 | 0.93 | 1.45 | 35.5 | ||
| 29 | BSU22370,aspB | 2 348 163 | 180.94 | 39.47 | 35.00 | 10.6 | ||
| 30 | BSU22840,engA | 2 391 372 | 183.00 | 7.43 | 17.65 | 14.9 | ||
| 31 | BSU23860,yqjI (gndA) | 2 481 775 | 315.90 | 95.85 | 93.23 | 13.3 | 2 | |
| 32 | BSU24620,tasA | 2 553 194 | 120.35 | 7.07 | 25.36 | 23.2 | 3 | |
| 33 | BSU24930,yqzD | 2 576 623 | 177.29 | 9.89 | 13.42 | 21.8 | 1 | |
| 34 | 5′_BSU24990,pstS | 2 580 671 | 1311.06 | 1.39 | 2.36 | 24.9 | 1 | |
| 35 | BSU25380,yqfA (floA) | 2 618 398 | 130.36 | 21.74 | 18.18 | 10.8 | 2 | |
| 36a | BSU25440,yqeU (rsmE) | 2 623 390 | 129.62 | 56.28 | 40.18 | 14.9 | 8 | |
| 36b | BSU25440,yqeU (rsmE) | 2 623 510 | 248.82 | 50.8 | ||||
| 36c | BSU25440,yqeU (rsmE) | 2 623 742 | 150.14 | 16.9 | ||||
| 37 | 5′_BSU26619,yrzO | 2 720 474 | 195.94 | 0.28 | 0.41 | 31.7 | ||
| 38 | BSU32060,yuiD | 3 298 413 | 116.50 | 9.05 | 6.48 | 12.1 | monocistronic | |
| 39 | 5′_BSU32070,yuiC | 3 298 554 | 347.87 | 1.52 | 1.31 | 10.6 | monocistronic | |
| 40 | BSU32110,yumC | 3 302 457 | 181.23 | 28.59 | 24.35 | 10.7 | monocistronic | |
| 41 | BSU32200,yutJ | 3 309 256 | 136.70 | 16.88 | 44.65 | 11.7 | monocistronic | |
| 42 | 5′_BSU33000,htrB | 3 385 425 | 369.02 | 7.84 | 12.42 | 14.8 | monocistronic | |
| 43 | BSU33950,cggR | 3 483 532 | 158.65 | 3.88 | 15.76 | 13.4 | 1 | |
| 44 | BSU34780,yvcI<>BSU34790,trxB | 3 573 049 | 2938.41 | 10.2 | ||||
| 45 | BSU35650,lytR (tagU) | 3 663 332 | 241.83 | 8.00 | 15.44 | 11.3 | monocistronic | |
| 46a | BSU36410,mbl | 3 747 544 | 169.82 | 26.15 | 45.07 | 13.0 | 3 | |
| 46b | BSU36410,mbl | 3 748 034 | 219.33 | 19.6 | ||||
| 47 | 5′_BSU36510,amtB | 3 756 769 | 129.14 | 4.92 | 19.76 | 26.8 | 1 | |
| 48 | 3′_BSU36520,glnK | 3 758 290 | 877.27 | 7.79 | 24.15 | 12.9 | 2 | |
| 49 | BSU36760,murAA | 3 778 464 | 134.98 | 59.60 | 233.24 | 10.6 | monocistronic | S1420 |
| 50 | BSU36830,atpA | 3 784 404 | 108.89 | 65.91 | 132.29 | 16.3 | 6 | |
| 51 | BSU37150,pyrG | 3 811 842 | 144.96 | 14.23 | 55.65 | 10.7 | monocistronic | |
| 52 | BSU37330,argS | 3 833 842 | 174.20 | 68.10 | 60.87 | 19.6 | monocistronic | |
| 53 | BSU37800,yweA<>BSU37810,spsL | 3 882 701 | 199.16 | 13.9 | ||||
| 54 | BSU38680,yxlD | 3 969 858 | 131.02 | 0.95 | 1.12 | 14.4 | 3 | |
| 55 | BSU39250,yxiE | 4 031 849 | 190.50 | 55.90 | 19.72 | 10.5 | 3 | |
| 56 | BSU39270,bglP<>BSU39280,yxxE | 4 031 756 | 35479.18 | 15.9 | 1 | |||
| 57 | BSU39400,pdp | 4 049 094 | 120.11 | 34.94 | 63.68 | 23.0 | 4 | |
| 58 | BSU41030,jag | 4 213 719 | 137.46 | 35.23 | 76.43 | 10.8 | 2 | S1579 |