Skip to main content
. 2016 Apr 21;7:516. doi: 10.3389/fpls.2016.00516

Table 1.

Primer sequences and amplification characteristics for 10 candidate reference genes and 1 gene of interest.

Unigene Gene symbol Gene name Accession number Arabidopsis Homolog locus Primer [5′−3′] Forward/reverse Product Size (bp) TM (°C) E (%) R2
comp39032_c0_seq1 Actin Actin KU853024 AT3G27000.1 AAGGTGATGGAATGGCTGAC/CAAGAACTGCTCCTCCAAGG 264 60 96.48 0.997
comp72555_c2_seq1 α-TUB α-tubulin KU853025 AT1G50010.1 AAAACTGTTGGTGGAGGCGA/TCTGGGTGAAAGAGTTGGCG 152 60 95.71 0.999
comp78934_c0_seq1 β-TUB β-tubulin KU853026 AT5G23860.2 AGAACGCCGACGAGTGTATG/AGGGAAACGAAGGCAGCAAG 149 60 90.51 0.994
comp21853_c0_seq1 UBC Ubiquitin conjugating enzyme KU853027 AT3G46460.1 TACCCAAACAGCCCTCCAAC/AGCAGCTTCAATGTTTGCCG 234 59 98.82 0.994
comp72593_c0_seq1 GAPDH Glyceraldehyde 3-phosphate dehydrogenase KU853028 AT1G13440.1 CTGGAGTTTTCACCGACAAGG/CCAATGGGGCAAGACAGTTAG 186 60 92.78 0.998
comp21491_c1_seq1 PP2A Protein phosphatase 2A KU853029 AT1G10430.1 TGATTACTTGCCCCTCACAGCC/CATAACAGGTCGCACATTGGTC 150 60 91.46 0.995
comp62257_c0_seq1 TIP41 TIP41-like protein KU853030 AT4G34270.1 ACGTTCCATTCTCACCTCCC/GCTTCCAACCAGTAAGAGCG 164 59 101.45 0.993
comp54677_c1_seq1 SAMS s-adenosylmethionine synthetase KU853031 AT4G01850.2 TCTTCCACCTCAACCCATCTG/TAAGCACCACTCCTGTCCAC 166 59 104.74 0.991
comp82277_c2_seq1 EF-1α Elongation factor 1 alpha KU853032 AT5G60390.2 TCCTGGGCATCGTGACTTTA/TTCATCATACCGAGCCTTTG 232 60 94.57 0.997
comp62008_c0_seq1 CYP cyclophilin KU853033 AT2G36130.1 GTTCTTCATTACCTTGGCACCT/TGACCGTTGACCGTAGTATCTT 161 58 99.23 0.995
comp63583_c0_seq1 F3H flavanone 3-hydroxylase KU853034 AT3G51240.1 GCTCTACCGCCTGATGACAAG/GTTACTCGCTTCCACCCCTCC 191 60 98.58 0.996

Unigenes were selected from the transcriptome of tree peony. The mean efficiency (E) of PCR amplification and the regression coefficient (R2) for each primer pair were calculated by the LightCycler 96 SW Software.