Table 1.

Genome sequencing and genetic variation

Clone	Number of read pairs (Millions)b	Median coveragec	% genome with at least 5× coverage	Genetic variationd
				SNPs	Indels	Structural variants
3D7A	24.6	124	99.9	98	143	66
F12a	24.1	118	99.9	103	157	51
A4a	18	132	99.9	104	168	44

^aGametocyte non-producers

^bFrom Illumina GA II 76 bp paired-end

^cMapped to 3D7 version 3.0 and excluding multi-copy apicoplast and mitochondria

^dTotal variation per sample, including shared genetic variation but only polymorphisms located in non-sub-telomeric and unique regions