Table 2.

SNP calling for mitochondrial genomes at ploidy =1

Site	BLM1	BLM2	BLM3	BLM4	BLM5	BLM6
7791 (atp8) (T/C)	10/8	0/29	17/22	2/72	79/39	24/3
8155 (atp6) (C/T)	29/0	0/34	17/0	50/0	121/2	15/0
15,572 (d-loop) (A/C)	14/41	0/30	6/46	8/65	88/100	29/4

SNP calling was based on reads mapped onto reference mitochondrial genome obtained from BLM5. Values represent the coverage of two alternative states as shown in first column. Sites are considered polymorphic (highlighted in bold) if both states have at least 5x coverage