TABLE 1 .
Patient | Isolatea | Yr isolated | BioSample no. | Accession no. | Genome size (bp) | CDSsb | No. of contigs | N50 |
---|---|---|---|---|---|---|---|---|
1 | AU6462 | 2003 | SAMN04436460 | LRYR00000000 | 6,678,504 | 6,119 | 81 | 178,306 |
1 | AU9381 | 2005 | SAMN04436461 | LRYD00000000 | 6,712,367 | 6,193 | 84 | 160,605 |
1 | AU10014 | 2005 | SAMN04436462 | LRYE00000000 | 6,515,569 | 5,989 | 76 | 168,780 |
1 | AU10015 | 2005 | SAMN04436463 | LRYF00000000 | 6,697,715 | 6,192 | 105 | 130,232 |
1 | AU10714 | 2006 | SAMN04436464 | LRYG00000000 | 6,518,682 | 6,031 | 89 | 138,224 |
1 | AU11866 | 2006 | SAMN04436465 | LRYH00000000 | 6,441,026 | 5,909 | 87 | 158,236 |
2 | AU2342 | 2000 | SAMN04436466 | LRYI00000000 | 6,644,537 | 6,137 | 59 | 247,442 |
2 | AU5471 | 2003 | SAMN04436467 | LRYJ00000000 | 6,576,117 | 6,061 | 48 | 417,292 |
2 | AU10241 | 2005 | SAMN04436468 | LRYK00000000 | 6,517,933 | 6,000 | 57 | 333,007 |
3 | AU6854 | 2004 | SAMN04436469 | LRYL00000000 | 6,746,537 | 6,202 | 66 | 276,987 |
3 | AU9739 | 2005 | SAMN04436470 | LRYM00000000 | 6,861,787 | 6,327 | 66 | 195,665 |
3 | AU20916 | 2010 | SAMN04436471 | LRYN00000000 | 6,837,226 | 6,300 | 70 | 231,549 |
4 | AU6923 | 2004 | SAMN04436472 | LRYO00000000 | 6,490,208 | 6,056 | 57 | 233,457 |
4 | AU12175 | 2006 | SAMN04436473 | LRYP00000000 | 6,529,487 | 6,105 | 76 | 193,222 |
4 | AU13212 | 2007 | SAMN04436474 | LRYQ00000000 | 6,519,696 | 6,061 | 38 | 349,744 |
4 | AU13213 | 2007 | SAMN04436475 | LRYS00000000 | 6,508,051 | 6,056 | 44 | 329,608 |
4 | AU16960 | 2008 | SAMN04436476 | LRYT00000000 | 6,499,229 | 6,051 | 33 | 588,702 |
5 | AU7032 | 2004 | SAMN04436477 | LRYU00000000 | 6,539,801 | 6,026 | 33 | 492,301 |
5 | AU15431 | 2008 | SAMN04436478 | LRYV00000000 | 6,545,379 | 6,063 | 39 | 426,848 |
6 | AU7033 | 2004 | SAMN04436479 | LRYW00000000 | 6,366,246 | 5,851 | 95 | 149,269 |
6 | AU10583 | 2006 | SAMN04436480 | LRYX00000000 | 6,353,322 | 5,816 | 55 | 272,732 |
6 | AU18068 | 2009 | SAMN04436481 | LRYY00000000 | 6,355,037 | 5,813 | 60 | 254,892 |
6 | AU24156 | 2012 | SAMN04436482 | LRYZ00000000 | 6,356,852 | 5,808 | 59 | 232,432 |
7 | AU7198 | 2004 | SAMN04436483 | LRZA00000000 | 6,548,147 | 6,081 | 91 | 130,397 |
7 | AU10272 | 2005 | SAMN04436484 | LRZB00000000 | 6,588,605 | 6,093 | 53 | 202,738 |
7 | AU10409 | 2005 | SAMN04436485 | LRZC00000000 | 6,475,849 | 5,985 | 56 | 184,471 |
7 | AU10410 | 2005 | SAMN04436486 | LRZD00000000 | 6,580,210 | 6,096 | 56 | 202,738 |
7 | AU10836 | 2006 | SAMN04436487 | LRZE00000000 | 6,536,502 | 6,110 | 124 | 111,223 |
7 | AU16821 | 2008 | SAMN04436488 | LRZF00000000 | 6,572,055 | 6,095 | 54 | 253,358 |
8 | AU8251 | 2004 | SAMN04436489 | LRZG00000000 | 6,293,365 | 5,797 | 56 | 209,586 |
8 | AU12528 | 2006 | SAMN04436490 | LRZH00000000 | 6,327,593 | 5,810 | 49 | 233,151 |
8 | AU17907 | 2009 | SAMN04436491 | LRZI00000000 | 6,336,865 | 5,820 | 54 | 211,550 |
9 | AU9017 | 2005 | SAMN04436492 | LRZJ00000000 | 6,328,267 | 5,757 | 39 | 370,552 |
9 | AU10502 | 2006 | SAMN04436493 | LRZK00000000 | 6,321,192 | 5,754 | 49 | 370,708 |
9 | AU11990 | 2006 | SAMN04436494 | LRZL00000000 | 6,321,329 | 5,752 | 39 | 428,683 |
9 | AU11991 | 2006 | SAMN04436495 | LRZM00000000 | 6,321,358 | 5,758 | 47 | 345,115 |
9 | AU12424 | 2006 | SAMN04436496 | LRZN00000000 | 6,320,793 | 5,749 | 38 | 424,798 |
9 | AU18274 | 2009 | SAMN04436497 | LRZO00000000 | 6,319,222 | 5,764 | 61 | 226,542 |
9 | AU25116 | 2012 | SAMN04436498 | LRZP00000000 | 6,317,546 | 5,772 | 80 | 215,654 |
10 | AU9899 | 2005 | SAMN04436499 | LRZQ00000000 | 6,240,563 | 5,706 | 64 | 213,685 |
10 | AU13210 | 2007 | SAMN04436500 | LRZR00000000 | 6,239,781 | 5,688 | 49 | 318,484 |
10 | AU19803 | 2010 | SAMN04436501 | LRZS00000000 | 6,158,966 | 5,617 | 52 | 232,854 |
10 | AU19804 | 2010 | SAMN04436502 | LRZT00000000 | 6,161,159 | 5,626 | 66 | 179,368 |
11 | AU10658 | 2006 | SAMN04436503 | LRZU00000000 | 6,341,036 | 5,836 | 77 | 176,289 |
11 | AU17091 | 2008 | SAMN04436504 | LRZV00000000 | 6,264,463 | 5,733 | 35 | 355,061 |
11 | AU21076 | 2010 | SAMN04436505 | LRZW00000000 | 6,230,429 | 5,700 | 64 | 193,145 |
11 | AU25210 | 2012 | SAMN04436506 | LRZX00000000 | 6,268,083 | 5,733 | 38 | 335,848 |
12 | AU10713 | 2006 | SAMN04436507 | LRZY00000000 | 6,262,596 | 5,719 | 51 | 238,345 |
12 | AU17550 | 2009 | SAMN04436508 | LRZZ00000000 | 6,255,564 | 5,701 | 35 | 418,726 |
12 | AU18132 | 2009 | SAMN04436509 | LSAA00000000 | 6,260,665 | 5,740 | 89 | 150,226 |
12 | AU19319 | 2009 | SAMN04436510 | LSAB00000000 | 6,257,108 | 5,707 | 43 | 268,203 |
12 | AU24526 | 2012 | SAMN04436511 | LSAC00000000 | 6,253,538 | 5,706 | 46 | 220,311 |
13 | AU10756 | 2006 | SAMN04436512 | LSAD00000000 | 6,825,418 | 6,267 | 53 | 373,936 |
13 | AU20671 | 2010 | SAMN04436513 | LSAE00000000 | 6,884,695 | 6,333 | 70 | 186,989 |
13 | AU24807 | 2012 | SAMN04436514 | LSAF00000000 | 6,740,949 | 6,211 | 89 | 139,380 |
14 | AU14820 | 2007 | SAMN04436515 | LSAG00000000 | 6,667,350 | 6,123 | 46 | 291,575 |
14 | AU17965 | 2009 | SAMN04436516 | LSAH00000000 | 6,692,467 | 6,139 | 40 | 375,961 |
14 | AU23529 | 2011 | SAMN04436517 | LSAI00000000 | 6,692,578 | 6,147 | 51 | 322,358 |
15 | AU1215 | 1999 | SAMN04436518 | LRSF00000000 | 6,487,674 | 5,986 | 80 | 160,063 |
15 | AU7511 | 2004 | SAMN04436519 | LRSG00000000 | 6,430,803 | 5,932 | 60 | 215,080 |
15 | AU13626 | 2007 | SAMN04436520 | LRSH00000000 | 6,423,934 | 5,912 | 48 | 260,857 |
15 | AU22632 | 2011 | SAMN04436521 | LRSI00000000 | 6,118,548 | 5,711 | 103 | 117,443 |
15 | AU24787 | 2012 | SAMN04436522 | LRSJ00000000 | 6,150,557 | 5,707 | 61 | 192,465 |
All isolates are included in Bioproject PRJNA309533 and SRA SRP068878.
CDSs, coding sequences.