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. 2016 Jan 8;5:39. [Version 1] doi: 10.12688/f1000research.7620.1

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Copyright: © 2016 Paquette SM et al.

This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

The author(s) is/are employees of the US Government and therefore domestic copyright protection in USA does not apply to this work. The work may be protected under the copyright laws of other jurisdictions when used in those jurisdictions.

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Figure 4. — This example is the end result of the overlay-driven layout use case described below. Using a simulated GRN data set (see Supplemental File 1 - https://f1000researchdata.s3.amazonaws.com/supplementary/7620/671ed832-fd5f-4130-a21e-c94b645b6720.sif), it groups genes into separate network modules. Two modules (upper and center left) contain “control genes”, while all other target genes are separated into modules based on their combination of inputs. Here the overlay intensity level is set near the minimum to de-emphasize the overlay features.