Table 1. Statistics of whole genome sequencing, genome assembly and annotation.
Gross statistics of the whole genome sequence data, mapping of reads, assembly of draft genome and annotation for isolates CSF-3053, 46-5069 and 43-13838. Length of reference genome (M. tuberculosis H37Rv, NC_000962.3) is 4,411,532 base pairs.
| Isolate | Total reads | % of reads mapped to reference | % of Reference covered | Number of contigs | N50 | Fold coverage of positions in the genome | GC content (%) | Number of predicted Genes | No. of predicted RNA genes | No. of predicted pseudo genes |
|---|---|---|---|---|---|---|---|---|---|---|
| CSF-3053 | 50,004,564 | 99.96 | 99.78 | 159 | 69,028 | 1329.0 | 65.5 | 4153 | 48 | 62 |
| 46-5069 | 44,478,206 | 98.67 | 99.82 | 173 | 63,852 | 920 | 65.5 | 4159 | 48 | 63 |
| 43-13838 | 40,767,970 | 98.69 | 99.80 | 177 | 63,019 | 920 | 65.5 | 4150 | 48 | 67 |
Notes.
- GC
- guanine/cytocine