Table 2. Regions of deletion and affected open reading frames found in isolates CSF-3053, 46-5069 and 43-13838.

All regions were confirmed by PCR reaction as described in methods.

Region in reference genome (H37Rv, NC_000962.3)	Length	Region of difference	Open reading frame (ORF) affected
1718912–1721213	2302	RD147c	Rv1526c
			Rv1525 (wbbL2)
			Rv1526c
3501225–3501723	499	This study	Rv3135
4092082–4092921	840	RD239	Rv3651