Table 7. S.aureus operon prediction validation results.
| No. | Operon name | Operon structure From experiments | Reference | Validation results |
|---|---|---|---|---|
| 1 | agr | agrBDCA | (40) | Predicted, exact |
| 2 | alr | orf1,orf2,orf3,dpj,alr,orf6,pemK | (47) | Predicted, exact |
| 3 | cap | capABCDEFGHIJKLMNOP | (38,39) | Predicted, exact |
| 4 | clp2161 | clp2161 | (48) | Predicted, exact |
| 5 | odh | csb22 (odh),csb22-1(nhaC S carnosus) | (48) | Predicted, exact |
| 6 | csb | csb28 (yhxD) | (48) | Predicted, exact |
| 7 | csb | csb29 (bmrU cotranscribed with bmr) | (48) | Predicted, exact |
| 8 | ctsR | ctsR, yacH, yacI,clp2392 | (48) | Predicted, exact |
| 9 | czr | czrAB | (49) | Predicted, exact |
| 10 | ddh | ddh | (50) | Predicted, exact |
| 11 | femAB | femA,femB | (51) | Predicted, exact |
| 12 | fhu | fhuC, fhuB, fhuD | (52) | Predicted, exact |
| 13 | glmM | orf1,orf2,glmM | (53) | Predicted, exact |
| 14 | hld | hld | (40) | Predicted, exact |
| 15 | hsp60 | hsp10(groES), hsp60(groEL) | (54,55) | Predicted, exact |
| 16 | lac | lacABCDFEG | (56) | Predicted, exact |
| 17 | mnh | mnhABCDEFG | (41) | Predicted, exact |
| 18 | nrd | nrdI,nrdE,nrdF | (46) | Predicted, exact |
| 19 | nrd | nrdD,nrdG | (46) | Predicted, exact |
| 20 | pheT | pheS, pheT | (57) | Predicted, exact |
| 21 | sar | sar | (58) | Predicted, exact |
| 22 | sigB | rsbU,rsbV,rsbW, sigB | (59–61) | Predicted, exact |
| 23 | sir | sirABC | (62) | Predicted, exact |
| 24 | spa | spa | (63) | Predicted, exact |
| 25 | ssp | sspA,sspB,sspC | (64) | Predicted, exact |
| 26 | sst | sstABCD | (65) | Predicted, exact |
| 27 | yurI | csb10(yurI),csb10-1(yurX),csb10-2 (yurW),csb10-3 (yurV),csb10-4(yurU) | (48) | Predicted, exact |
| 28 | dlt | dltABCD | (66,67) | Predicted, inclusive |
| 29 | gln | pr,glnR,glnA | (68,69) | Predicted, inclusive |
| 30 | hsp70 | hrc37, hsp20, hsp70, hsp40, orf35 | (54) | Predicted, inclusive |
| 31 | lrg | lrgA,lrgB | (70) | Predicted, inclusive |
| 32 | lyt | lytS,lytR | (70) | Predicted, inclusive |
| 33 | yckG | csb4 (yckG), csb4-1(yckF) | (48) | Predicted, inclusive |
| 34 | egc | seo,sem,sei,Ψent1,Ψent2,sen,seg | (71) | split |
| 35 | spl | splA, splB, splC, splD, splE, splF | (72) | split |
| 36 | tca | tcaR,tcaA,tcaB | (73) | split |
The meanings of the validation results are as follow. ‘Predicted, exact’: the published operon is exactly the same as predicted by the consensus method described in this paper. ‘Predicted, inclusive’: the published operon is predicted by the consensus method, but there are additional genes in the predicted operon. ‘split’: The published operon is divided into two or more predicted operons by the consensus method.