Table 3.

Linkage disequilibrium (LD) analysis of 11 studied KIR genes in population background (BD, part A), HIV-positive (HIV+, lower triangle, part B), and exposed but uninfected individuals (EU, upper triangle, part B)

A												B
2DS1	2DS2	2DS3	2DS4	2DS5	3DS1	2DL1	2DL2	2DL3	2DL5	3DL1		2DS1	2DS2	2DS3	2DS4	2DS5	3DS1	2DL1	2DL2	2DL3	2DL5	3DL1
D′	0.039	0.362	−1.000	1.000	0.910	1.000	0.002	−0.125	0.948	−1.000	2DS1	D′	−0.056	0.171	−1.000	0.842	0.750	1.000	0.015	1.000	0.650	−1.000
r 2	0.001	0.080	0.080	0.753	0.828	0.005	0.000	0.002	0.610	0.080		r 2	0.001	0.018	0.083	0.499	0.520	0.011	0.000	0.019	0.334	0.062
		0.760	−0.039	−0.032	0.039	−1.000	1.000	−1.000	0.285	−0.039	2DS2	−1.000		0.711	0.410	−0.039	0.062	−1.000	0.927	−1.000	0.238	1.000
		0.203	0.000	0.000	0.001	0.011	0.960	0.083	0.069	0.000		0.054		0.175	0.004	0.000	0.002	0.035	0.776	0.060	0.041	0.019
			−0.669	0.183	0.426	1.000	0.764	−0.811	1.000	−0.669	2DS3	0.374	−0.328		−0.372	−0.272	0.332	1.000	0.773	0.017	0.681	−0.163
			0.059	0.027	0.111	0.003	0.214	0.156	0.415	0.059		0.101	0.003		0.019	0.006	0.062	0.007	0.187	0.000	0.222	0.003
				−0.650	−1.000	−1.000	−0.058	0.192	−1.000	1.000	2DS4	−0.178	−0.295	−0.376		−0.676	−1.000	−1.000	−0.092	−1.000	−1.000	1.000
				0.045	0.080	0.000	0.000	0.020	0.054	1.000		0.002	0.003	0.011		0.054	0.077	0.001	0.000	0.002	0.066	0.743
					0.945	1.000	−0.087	0.000	1.000	−0.650	2DS5	0.931	0.245	0.059	−0.839		0.892	1.000	−0.010	1.000	0.830	−1.000
					0.673	0.004	0.003	0.000	0.512	0.045		0.450	0.017	0.003	0.073		0.517	0.008	0.000	0.013	0.384	0.088
						1.000	0.002	−0.125	0.948	−1.000	3DS1	0.871	0.336	0.426	−1.000	0.845		1.000	0.019	−0.126	0.793	−1.000
						0.005	0.000	0.002	0.610	0.080		0.637	0.053	0.156	0.064	0.441		0.012	0.000	0.002	0.539	0.057
							−1.000	1.000	1.000	−1.000	2DL1	−0.452	−0.635	0.647	−1.000	−0.233	0.253		−1.000	1.000	1.000	−1.000
							0.012	0.134	0.008	0.000		0.017	0.018	0.012	0.002	0.008	0.002		0.032	0.590	0.014	0.001
								−1.000	0.255	−0.058	2DL2	0.298	0.929	0.854	−0.465	0.230	0.326	−0.636		−0.637	0.203	0.258
								0.087	0.057	0.000		0.050	0.855	0.295	0.007	0.015	0.050	0.018		0.022	0.027	0.001
									−0.745	0.192	2DL3	−0.121	−0.568	−0.284	0.018	−0.074	−0.027	0.571	−0.601		−0.081	−1.000
									0.055	0.020		0.004	0.048	0.030	0.000	0.003	0.000	0.098	0.055		0.001	0.001
										−1.000	2DL5	0.765	0.467	0.945	−0.874	0.914	0.888	0.097	0.460	−0.654		−1.000
										0.054		0.368	0.192	0.405	0.026	0.272	0.417	0.001	0.189	0.072		0.049
											3DL1	−1.000	−0.377	−0.518	0.938	−0.751	−1.000	−1.000	−0.380	0.025	−0.806
												0.071	0.006	0.026	0.672	0.077	0.084	0.003	0.006	0.000	0.029

Values marked in bold represent genes in significant LD

D’ - linkage disequilibrium value, r ² - relative linkage disequilibrium value