Table 2.
Pop | n | S | K | Pi | Tajima’s D | h | Hd | Fu’s Fs | Fu and Li’s D* | Fu and Li’s F* | τ | SSD | r |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Southwest | |||||||||||||
YNLH | 42 | 16 | 4.570 | 0.070 | 0.731 | 14 | 0.913 | −1.598 | 0.337 | 0.553 | 5.486 | 0.032* | 0.114* |
YNNE | 32 | 18 | 4.776 | 0.073 | 0.233 | 13 | 0.917 | −1.637 | 0.909 | 0.815 | 5.496 | 0.025 | 0.095* |
SCNJ | 44 | 15 | 3.744 | 0.058 | 0.269 | 16 | 0.922 | −4.107* | 0.678 | 0.640 | 5.066 | 0.011 | 0.029 |
South | |||||||||||||
GXBS | 22 | 16 | 4.368 | 0.067 | −0.018 | 17 | 0.974 | −9.984** | −0.135 | −0.116 | 4.879 | 0.004 | 0.018 |
GZLD | 32 | 7 | 3.601 | 0.055 | 3.118 | 4 | 0.575 | 5.319* | 1.269 | 2.138* | 8.051 | 0.260 | 0.541** |
GZCJ | 40 | 15 | 4.318 | 0.066 | 0.715 | 18 | 0.924 | −5.611* | 0.698 | 0.830 | 5.539 | 0.004 | 0.015 |
GXLZ | 32 | 11 | 3.216 | 0.049 | 0.563 | 14 | 0.823 | −4.616* | −0.092 | 0.132 | 5.156 | 0.023 | 0.088 |
HNBT | 30 | 13 | 3.724 | 0.057 | 0.445 | 13 | 0.871 | −3.066* | 0.174 | 0.303 | 5.830 | 0.030 | 0.058 |
GDQY | 36 | 15 | 5.335 | 0.082 | 1.543 | 11 | 0.883 | 0.529 | 1.137 | 1.493 | 6.641 | 0.021 | 0.071 |
FJXM | 26 | 17 | 4.028 | 0.062 | −0.338 | 14 | 0.923 | −4.397* | −0.463 | −0.497 | 2.371 | 0.003 | 0.010 |
Central | |||||||||||||
HBWX | 42 | 6 | 1.153 | 0.018 | −0.457 | 4 | 0.301 | 1.111 | 0.356 | 0.122 | 3.000 | 0.056* | 0.497 |
HNXY | 38 | 5 | 0.906 | 0.014 | −0.614 | 4 | 0.368 | 0.377 | 0.204 | −0.052 | 3.000 | 0.038 | 0.310 |
JSSN | 30 | 6 | 0.759 | 0.012 | −1.424 | 4 | 0.251 | −0.257 | −1.111 | −1.403 | 3.000 | 0.030 | 0.511 |
AHWH | 62 | 6 | 0.754 | 0.012 | −1.001 | 5 | 0.292 | −0.700 | 1.158 | 0.544 | 3.000 | 0.030 | 0.425 |
SDHZ | 38 | 29 | 9.757 | 0.150 | 1.431 | 9 | 0.728 | 5.974* | 0.770 | 1.177 | 18.506 | 0.080* | 0.118* |
n number of sequences used, S number of polymorphic (segregating) sites, K average number of pairwise nucleotide differences, Pi nucleotide diversity, h number of Haplotypes, Hd haplotype diversity, τ estimated parameter of population expansion assuming the stepwise growth model (τ = 2 t*MU where t = time in years, MU = mutation rate per locus), SSD the sum of squared deviations; and r Harpending’s raggedness index
*P < 0.05; **P < 0.01 (FDR < 0.02)