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. 2016 Apr 25;2016:baw055. doi: 10.1093/database/baw055

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© The Author(s) 2016. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Excerpt from the GPAD-formatted file generated by CollecTF, showing TF-centric annotations corresponding to two curations. Each individual line represents an annotation, with the relationship field denoting whether the gene product specified by the UniProtKB identifier ‘enables’ a molecular function or is ‘involved in’ a biological process. The specific function supported by the evidence is defined by a GO ID, such as GO:0001217 (bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding). The literature reference is indicated by means of a PubMed ID, and the evidence supporting the annotation is specified by an ECO term, such as ECO:0001807 (electrophoretic mobility shift assay evidence used in manual assertion).