Table 2.
Nucleotide and amino acid sequence similarity (%) between CBNV strain CBN-3 and representative rodent-, shrew- and talpid-borne hantaviruses.
| Virus strain | S segment
|
M segment
|
L segment
|
|||
|---|---|---|---|---|---|---|
| 1,284nt | 428aa | 3,417nt | 1,139aa | 6,453nt | 2,151aa | |
| CBNV ROM117784 | 84.7 | 97.4 | 82.3 | 93.3 | 83.5 | 96.5 |
| CBNV ROM117730 | 81.3 | 94.2 | – | – | 82.1 | 97.1 |
| LHEV As-1 | 82.5 | 95.1 | – | – | – | – |
| LHEV As-216 | 82.3 | 95.1 | – | – | 77.2 | 94.5 |
| LHEV As-217 | 82.5 | 94.9 | 80.0 | 92.7 | 77.6 | 94.7 |
| LHEV As-220 | 82.6 | 95.3 | 80.2 | 92.4 | – | – |
| LHEV As-221 | 82.5 | 95.3 | 80.1 | 92.5 | 77.0 | 93.8 |
| LHEV As-222 | 82.4 | 95.3 | 79.7 | 91.4 | 79.3 | 92.7 |
| LHEV As-238 | 82.4 | 95.6 | 80.2 | 92.7 | 79.9 | 93.5 |
| LHEV As-255 | 82.4 | 95.3 | 79.0 | 89.6 | 77.2 | 94.5 |
| LHEV As-311 | 82.4 | 95.1 | – | – | 76.0 | 91.8 |
| XYIV MVZ180988 | 77.6 | 92.8 | 77.2 | 86.8 | 80.0 | 93.9 |
| XYIV MVZ180979 | 76.5 | 90.6 | 77.6 | 87.4 | 77.6 | 92.2 |
| XYIV MVZ 180981 | – | – | 79.1 | 88.2 | 77.6 | 92.2 |
| XYIV MVZ 180982 | 80.0 | 92.5 | 79.2 | 88.2 | 77.6 | 92.2 |
| XYIV MVZ 180983 | – | – | 77.8 | 87.4 | 77.6 | 92.2 |
| XYIV MVZ 180986 | 76.5 | 87.0 | 79.0 | 88.2 | 77.6 | 92.2 |
| XYIV MVZ 181004 | 76.3 | 90.6 | 79.1 | 88.2 | 77.6 | 92.2 |
| ARRV MSB73418 | 70.7 | 69.3 | – | – | 78.0 | 90.4 |
| JMSV MSB144475 | 72.0 | 77.1 | 74.0 | 79.6 | 77.5 | 89.3 |
| SWSV mp70 | 65.8 | 69.9 | 77.1 | 81.9 | 73.7 | 82.1 |
| QHSV YN05-284 | 67.3 | 69.9 | 72.0 | 77.5 | 78.6 | 87.9 |
| KKMV MSB148794 | 66.7 | 67.3 | 71.2 | 76.3 | 75.1 | 84.8 |
| MJNV Cl05-11 | 50.8 | 47.7 | 42.9 | 41.3 | 64.5 | 62.3 |
| TPMV VRC66412 | 49.8 | 48.4 | 41.3 | 42.4 | 64.0 | 61.9 |
| BOWV VN1512 | 69.2 | 74.5 | 66.7 | 66.2 | 72.2 | 78.2 |
| TGNV Tan826 | 65.8 | 64.6 | – | – | 72.5 | 77.4 |
| AZGV KBM15 | 68.3 | 63.3 | 70.0 | 76.9 | 72.2 | 77.8 |
| JJUV 10-11 | 69.6 | 70.3 | 66.3 | 63.9 | 71.2 | 77.5 |
| OXBV Ng1453 | 69.3 | 74.5 | 68.2 | 66.4 | 72.8 | 80.6 |
| ASAV N10 | 69.8 | 71.5 | 68.8 | 71.0 | 74.8 | 83.6 |
| RKPV MSB57412 | 64.3 | 61.4 | 59.1 | 51.8 | 68.0 | 68.3 |
| NVAV MSB95703 | 58.5 | 50.2 | 57.4 | 43.2 | 65.2 | 62.0 |
| HTNV 76-118 | 65.1 | 64.3 | 63.7 | 61.0 | 71.6 | 77.9 |
| SEOV 80-39 | 64.0 | 62.6 | 63.9 | 60.8 | 70.7 | 77.5 |
| SOOV SOO-1 | 65.4 | 65.0 | 63.8 | 60.6 | 71.5 | 78.1 |
| DOBV Greece | 65.0 | 62.4 | 63.6 | 61.6 | 72.0 | 78.3 |
| PUUV Sotkamo | 64.3 | 61.9 | 59.1 | 51.6 | 68.5 | 70.2 |
| TULV 5302v | 63.0 | 61.4 | 60.9 | 52.7 | 68.4 | 68.9 |
| PHV PH-1 | 62.6 | 58.2 | 58.2 | 52.2 | 67.1 | 68.5 |
| ANDV Chile9717869 | 63.8 | 61.4 | 61.5 | 54.4 | 67.8 | 69.1 |
| SNV NMH10 | 53.9 | 59.3 | 61.5 | 54.1 | 68.1 | 69.5 |
Abbreviations: ANDV, Andes virus; ARRV, Ash River virus; ASAV, Asama virus; AZGV, Azagny virus; BOWV, Bowé virus; CBNV, Cao Bang virus; DOBV, Dobrava virus; HTNV, Hantaan virus; JJUV, Jeju virus; JMSV, Jemez Spring virus; KKMV, Kenkeme virus; LHEV, Lianghe virus; MJNV, Imjin virus; NVAV, Nova virus; OXBV, Oxbow virus; PHV, Prospect Hill virus; PUUV, Puumala virus; QHSV, Qian Hu Shan virus; RKPV, Rockport virus; SEOV, Seoul virus; SNV, Sin Nombre virus; SOOV, Soochong virus; SWSV, Seewis virus; TGNV, Tanganya virus; TPMV, Thottapalayam virus; TULV, Tula virus; XYIV, Xinyi virus. nt, nucleotides; aa, amino acids.
– sequences unavailable