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. 2016 Apr 26;6:24966. doi: 10.1038/srep24966

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Copyright © 2016, Macmillan Publishers Limited

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Maximum-likelihood phylogenetic analysis of archaeal 16S rRNA genes and transcripts (A) and the percentage of each OTU (97% sequence similarity) in the corresponding clone library (B), and maximum-likelihood phylogenetic analysis of archaeal amoA genes and transcripts (C) and the percentage of each OTU (95% sequence similarity) in the corresponding clone library (D) from the South China Sea T. swinhoei. OTU representatives are marked. Scale bar represents 5% (for 16S rRNA) or 10% (for amoA) nucleotide sequence divergence per homologues position. Bootstrap values more than 50% of 1000 replicates are shown on the trees. The outgroup of the archaeal 16S rRNA tree is a bacterial 16S rRNA sequence of candidatus Poribacteria sp. WGA-4CII (accession no. KC713966) and the outgroup of the archaeal amoA tree is a bacterial amoA sequence of Nitrosospira multiformis (accession no. AF042171).