Table 3. Up-regulated functional clusters of GO terms for biological processes.
| Functional clusters | Di-2 | Ei-2 | Ler-0 | St-0 | Wt-1 |
|---|---|---|---|---|---|
| chitin catabolic process | ✓ | ||||
| Golgi organization | ✓ | ✓ | |||
| abscission | ✓ | ||||
| response to far red light | ✓ | ||||
| cation homeostasis | ✓ | ✓ | |||
| iron ion transport | ✓ | ||||
| maltose metabolic process | ✓ | ✓ | |||
| nitrate assimilation | ✓ | ||||
| anthocyanin-containing compound biosynthesis | ✓ | ✓ | |||
| response to wounding | ✓ | ✓ | ✓ | ||
| negative regulation of catalytic activity | ✓ | ✓ | |||
| response to nitrate | ✓ | ||||
| myo-inositol hexakisphosphate biosynthetic process | ✓ | ||||
| cellular response to iron ion starvation | ✓ | ||||
| photosystem II assembly | ✓ | ✓ | |||
| para-aminobenzoic acid metabolic process | ✓ | ✓ | |||
| drug transmembrane transport | ✓ | ✓ | |||
| cell proliferation | ✓ | ||||
| vesicle-mediated transport | ✓ | ✓ | |||
| positive regulation of catalytic activity | ✓ | ||||
| cell wall organization or biogenesis | ✓ | ||||
| response to karrikin | ✓ | ||||
| plant-type cell wall biogenesis | ✓ | ✓ | |||
| protein folding | ✓ | ✓ | ✓ | ||
| acetyl-CoA metabolic process | ✓ | ||||
| multidimensional cell growth | ✓ | ||||
| anther development | ✓ | ||||
| ethylene biosynthetic process | ✓ | ✓ | |||
| vitamin metabolic process | ✓ | ||||
| cytokinesis by cell plate formation | ✓ | ||||
| mRNA modification | ✓ | ✓ | |||
| cellulose metabolic process | ✓ | ||||
| toxin catabolic process | ✓ | ||||
| detection of biotic stimulus | ✓ | ✓ | |||
| cell surface receptor signaling pathway | ✓ | ||||
| DNA replication initiation | ✓ | ||||
| response to cyclopentenone | ✓ | ✓ | |||
| cellular homeostasis | ✓ | ||||
| dicarboxylic acid biosynthetic process | ✓ | ||||
| ncRNA metabolic process | ✓ | ||||
| carotenoid biosynthetic process | ✓ | ||||
| regulation of protein dephosphorylation | ✓ | ||||
| monocarboxylic acid transport | ✓ | ||||
| defense response by callose deposition | ✓ | ✓ | |||
| ribonucleoside monophosphate biosynthetic process | ✓ | ||||
| organelle localization | ✓ | ||||
| response to cadmium ion | ✓ | ✓ | |||
| nucleoside transport | ✓ | ||||
| aspartate family amino acid catabolic process | ✓ | ✓ | |||
| proteolysis | ✓ | ||||
| water transport | ✓ | ||||
| vacuole organization | ✓ | ||||
| response to symbiotic fungus | ✓ | ||||
| tricarboxylic acid cycle | ✓ | ||||
| lipid modification | ✓ | ||||
| macromolecule catabolic process | ✓ | ||||
| response to hexose | ✓ | ||||
| response to salt stress | ✓ | ||||
| pollen exine formation | ✓ | ||||
| divalent metal ion transport | ✓ | ||||
| glucosinolate biosynthetic process | ✓ | ||||
| response to high light intensity | ✓ | ✓ | |||
| xylem development | ✓ | ||||
| photosynthesis | ✓ | ||||
| actin filament-based movement | ✓ | ||||
| hydrogen peroxide biosynthetic process | ✓ | ||||
| protein desumoylation | ✓ | ||||
| secondary metabolic process | ✓ | ||||
| mRNA export from nucleus | ✓ | ||||
| polysaccharide catabolic process | ✓ | ||||
| mRNA metabolic process | ✓ | ||||
| cofactor biosynthetic process | ✓ | ||||
| secondary metabolite biosynthetic process | ✓ | ✓ | |||
| alcohol metabolic process | ✓ | ||||
| killing of cells of other organism | ✓ | ||||
| response to hydrogen peroxide | ✓ | ✓ | |||
| regulation of cellular component organization | ✓ | ||||
| determination of bilateral symmetry | ✓ | ||||
| cellular response to phosphate starvation | ✓ | ||||
| positive regulation of transcription, DNA-templated | ✓ | ||||
| transmembrane transport | ✓ | ||||
| plant-type cell wall modification | ✓ | ✓ | |||
| jasmonic acid biosynthetic process | ✓ | ✓ | |||
| pyrimidine ribonucleotide biosynthetic process | ✓ | ||||
| seed germination | ✓ | ||||
| regulation of developmental growth | ✓ | ||||
| RNA 3'-end processing | ✓ | ||||
| respiratory electron transport chain | ✓ | ||||
| pectin catabolic process | ✓ | ||||
| recognition of pollen | ✓ | ||||
| negative regulation of programmed cell death | ✓ | ||||
| signal peptide processing | ✓ | ||||
| N-terminal protein myristoylation | ✓ | ||||
| phosphate ion transport | ✓ | ||||
| endocytosis | ✓ | ||||
| oligopeptide transport | ✓ | ||||
| galactolipid biosynthetic process | ✓ | ||||
| glycerol metabolic process | ✓ |
Left column represent super categories of GO terms. The rest of columns indicate whether the super category was up-regulated in the corresponding ecotype.