Table 2.
Structure comparison of the reconstructed metabolic models for Arabidopsis.
| References | Abbreviation | Year | Organelles | Number of genes | Number of metabolites | Number of reactions | Number of exchange reactions | Number of intracellular transporters |
|---|---|---|---|---|---|---|---|---|
| Poolman et al., 2009 | Poolman[a] | 2009 | 2 (c,m) | Not available | 1253 | 1406 | 42 | – |
| de Oliveira Dal'Molin et al., 2010a | AraGEM[a] | 2010 | 5 (c,m,p,x,v) | 1419 | 1737 | 1601 | 18 | 81 |
| Radrich et al., 2010 | Radrich[a] | 2010 | – | 1571 | 2328 | 2315 | – | – |
| Saha et al., 2011 | iRS1597[a] | 2011 | 5 (c,m,p,x,v) | 1597 | 1820 | 1844 | 18 | 81 |
| Mintz-Oron et al., 2012 | Mintz-Oron[a] | 2012 | 7 (c,m,p,x,v,g,e) | 1223 | 2930 | 3508 | 101 | 772 |
| Chung et al., 2013 | iAT1475[b] | 2013 | 4 (c,m,p,x) | 1475 | 1761 | 1895 | 22 | 86 |
| Cheung et al., 2013 | Cheung[a] | 2013 | 5 (c,m,p,x,v) | 2857 | 2739 | 2769 | 20 | 192 |
| Arnold and Nikoloski, 2014 | AraCore[a] | 2014 | 4 (c,m,p,x) | 634 | 407 | 549 | 98 | 124 |
Symbol “–“indicates information is unknown; “a” indicates information is extracted from the original models; “b” indicates information is retrieved from papers. Exchange reactions allow for exchange of specific metabolites with the extracellular space. Transporters indicate metabolites can move between intracellular organelles; “c,” cytosol; “m,” mitochondria; “p,” plastid; “x,” peroxisome; “v,” vacuole; “g,” Golgi; “e,” endoplasmic reticulum.