Table 1. NoV recombinant sequences detected in Southern Brazil during the period of 2004–2011, with the partial 3’-ORF1 and 5’-ORF2 of NoV genome.
Year | Sample identification | Accession number | Acute gastroenteritis outbreak date(month/year) | NoV Genotyping | Bootscan p-value | |
---|---|---|---|---|---|---|
ORF1 | ORF2 | |||||
2004 | LVCA-7842 | KR074148 | 12/2004 | GII.P7 | GII.6 | 6.027 x 10−4 |
LVCA-9732 | KR074149 | 09/2004 | GII.P7 | GII.14 | 3.610 x 10−4 | |
LVCA-9752 | KR074150 | 09/2004 | GII.P7 | GII.6 | 9.343 x 10−3 | |
2005 | LVCA-11125 | KR074151 | 08/2005 | GII.Pe | GII.17 | 4.141 x 10−5 |
LVCA-11178 | KR074152 | 09/2005 | GII.Pe | GII.17 | 6.426 x 10−5 | |
2006 | LVCA-11938 | KR074153 | 03/2006 | GII.P13 | GII.17 | 8.085 x 10−9 |
2007 | LVCA-14441 | KR074158 | 10/2007 | GII.P7 | GII.6 | 7.127 x 10−4 |
2008 | LVCA-14941 | KR074170 | 04/2008 | GII.P7 | GII.6 | 8.509 x 10−4 |
LVCA-15040 | KR074177 | 04/2008 | GII.P7 | GII.6 | 2.093 x 10−5 | |
LVCA-15073 | KR074159 | 04/2008 | GII.P21 | GII.3 | 8.195 x 10−7 | |
LVCA-15109 | KR074160 | 05/2008 | GII.P7 | GII.6 | 2.807 x 10−4 | |
LVCA-15934 | KR074178 | 11/2008 | GII.P7 | GII.6 | 5.513 x 10−5 | |
2009 | LVCA-16138 | KR074161 | 01/2009 | GII.Pg | GII.12 | 1.680 x 10−4 |
LVCA-16253 | KR074162 | 03/2009 | GII.Pg | GII.12 | 1.255 x 10−4 | |
LVCA-16344 | KR074191 | 04/2009 | GII.Pg | GII.12 | 8.017 x 10−5 | |
LVCA-16345 | KR074185 | 04/2009 | GII.Pg | GII.12 | 3.012 x 10−4 | |
2010 | LVCA-17775 | KR074172 | 03/2010 | GII.P7 | GII.6 | 5.943 x 10−4 |
LVCA-17819 | KR074173 | 03/2010 | GII.P7 | GII.6 | 1.242 x 10−4 | |
LVCA-18916 | KR074174 | 09/2010 | GII.P21 | GII.13 | 7.077 x 10−11 | |
LVCA-19085 | KR074179 | 11/2010 | GII.P16 | GII.3 | 8.609 x 10−11 | |
2011 | LVCA-19355 | KR074181 | 01/2011 | GII.P16 | GII.3 | 4.847 x 10−10 |
LVCA-19502 | KR074163 | 01/2011 | GII.P16 | GII.3 | 7.580 x 10−11 | |
LVCA-19703 | KR074164 | 03/2011 | GII.P16 | GII.3 | 8.050 x 10−10 |