Table 4.
Pathway tool |
Output |
|||
---|---|---|---|---|
PANTHER GO-slim Molecular Function | Expected ngenes | Observed ngenes | Fold enrichment | Pathway enrichment P |
Methyltransferase activity |
0.26 |
4 |
>5 |
0.002$ |
DAVID | Count | Coverage | Enrichment score | Pathway enrichment P |
Methyltransferase activity |
5 |
1.1% |
2.46 |
0.06* |
GeneMANIA | Coverage | Pathway enrichment P | ||
Methyltransferase activity | 7/87 | 4.76e-04* |
PANTHER reports the Bonferroni method
DAVID and GeneMANIA report the Benjamini-Hochberg (false-discovery rate, FDR) method.