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. 2016 Apr 27;7:598. doi: 10.3389/fmicb.2016.00598

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Copyright © 2016 Hamilton, Bovee, Sattin, Mohr, Gilhooly, Lyons, Pearson and Macalady.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic classification of ribosomal protein S3 (rpS3) sequences affiliated with Deltaproteobacteria (A) and Clostridia (B). (A) Rank-abundance curve of Deltaproteobacterial ribosomal protein S3 (rpS3) sequences from the 8 m and sediment metagenomes classified at the order level. (B) Maximum likelihood phylogenetic tree of rpS3 sequences affiliated with Clostridia recovered from the 8 m and sediment metagenomes and closely related sequences. Sequences recovered in the present study are in bold. NCBI accession numbers or IMG gene ids are shown in parentheses. Bootstrap support values based on 1000 bootstrap samplings >90 are noted. Cov = average depth of coverage of the contig containing the rpS3 sequence.