Table 2. Diversity values and models of DNA evolution of the fragments used for the analyses in 59 Quercus species (137 individuals) and 4 outgroup taxa.
Markers | AL | P | Nhap | Hd | S | PICs | θw | π | ME |
---|---|---|---|---|---|---|---|---|---|
rbcL | 743 | 0.00–0.008 | 28 | 0.846 ± 0.027 | 26 | 18 | 0.0063 | 0.0027 | HKY+ I |
trnH-psbA | 634 | 0.00–0.035 | 37 (84) | 0.944 ± 0.008 | 38 | 23 | 0.0159 | 0.009 | GTR+ G |
trnK/matK | 705 | 0.00–0.022 | 49 (51) | 0.952 ± 0.008 | 59 | 31 | 0.0156 | 0.0064 | n.d. |
trnK (intron) | 401 | n.d. | 32 (34) | 0.821 ± 0.028 | 36 | 16 | 0.0169 | 0.0048 | GTR+ G |
matK (codons) | 304 | n.d. | 25 | 0.925 ± 0.008 | 23 | 15 | 0.0146 | 0.0086 | HKY |
rbcL+trnK/matK+trnH-psbA | 2,082 | 0.00–0.014 | 74 (110) | 0.978 ± 0.005 | 122 | 72 | 0.0119 | 0.0056 | Combined |
rbcL +matK | 1,047 | n.d. | 49 | 0.965 ± 0.006 | 49 | 33 | 0.0085 | 0.0044 | n.d. |
trnH-psbA +trnK | 1,035 | n.d. | 57 (103) | 0.954 ± 0.008 | 69 | 34 | 0.0161 | 0.0067 | n.d. |
trnH-psbA +trnK-matK | 1339 | n.d. | 65 (110) | 0.970 ± 0.006 | 92 | 49 | 0.0155 | 0.0072 | n.d. |
Notes.
- AL
- Aligned length (bp)
- P
- uncorrected p-distance (min.–max.)
- N hap
- Number of identified haplotypes, brackets: with gaps considered
- Hd
- Haplotype diversity
- S
- Number of polymorphic sites
- θ
- Nucleotide polymorphism
- π
- Nucleotide diversity
- PIC
- Number of Parsimony Informative Characters
- ME
- Model of evolution