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. 2016 Apr 21;4:e1897. doi: 10.7717/peerj.1897

Table 2. Diversity values and models of DNA evolution of the fragments used for the analyses in 59 Quercus species (137 individuals) and 4 outgroup taxa.

Markers AL P Nhap Hd S PICs θw π ME
rbcL 743 0.00–0.008 28 0.846 ± 0.027 26 18 0.0063 0.0027 HKY+ I
trnH-psbA 634 0.00–0.035 37 (84) 0.944 ± 0.008 38 23 0.0159 0.009 GTR+ G
trnK/matK 705 0.00–0.022 49 (51) 0.952 ± 0.008 59 31 0.0156 0.0064 n.d.
trnK (intron) 401 n.d. 32 (34) 0.821 ± 0.028 36 16 0.0169 0.0048 GTR+ G
matK (codons) 304 n.d. 25 0.925 ± 0.008 23 15 0.0146 0.0086 HKY
rbcL+trnK/matK+trnH-psbA 2,082 0.00–0.014 74 (110) 0.978 ± 0.005 122 72 0.0119 0.0056 Combined
rbcL +matK 1,047 n.d. 49 0.965 ± 0.006 49 33 0.0085 0.0044 n.d.
trnH-psbA +trnK 1,035 n.d. 57 (103) 0.954 ± 0.008 69 34 0.0161 0.0067 n.d.
trnH-psbA +trnK-matK 1339 n.d. 65 (110) 0.970 ± 0.006 92 49 0.0155 0.0072 n.d.

Notes.

AL
Aligned length (bp)
P
uncorrected p-distance (min.–max.)
N hap
Number of identified haplotypes, brackets: with gaps considered
Hd
Haplotype diversity
S
Number of polymorphic sites
θ
Nucleotide polymorphism
π
Nucleotide diversity
PIC
Number of Parsimony Informative Characters
ME
Model of evolution