Table 2.

DEGs involved in the salinity response and their homologs in the rice genome.

Gene ID	Control	6 h	24 h	FDR	Rice Homolog	Function
m.155459	10.5	7.9	21.26	8.07 × 10−8	OsHsfC1b	heat shock transcription factor
m.184302	9.53	12.6	5.12	7.74 × 10−8	OsNHX1	vacuolar Na+/H+ antiporter
m.37867	0.11	2.34	0.25	8.81 × 10−5	OsLEA3-2	late embryogenesis abundant protein
m.39376	1.29	2.34	0.94	1.37 × 10−5	OsNHX1	vacuolar Na+/H+ antiporter
m.40521	6.24	18.4	4.11	1.54 × 10−9	Oshox22	homeobox-leucine zipper protein HOX22
m.43934	0.16	4.2	0.92	0.00086	OsLEA3-2	late embryogenesis abundant protein
m.44033	5.49	2.87	11.06	5.52 × 10−14	DCA1	Transcriptional co-activator of DST; CHY zinc finger protein
m.83348	6.35	9.8	4.25	4.10 × 10−8	OsNHX1	vacuolar Na+/H+ antiporter
m.135953	17.7	9.44	8.2	4.98 × 10−6	OsiSAP8	O. sativa subspecies indica stress-associated protein
m.47323	6.26	4.5	2.71	0.00051	OsMKK1	mitogen-activated protein kinase kinase
m.54442	7.06	2.26	1.95	5.50 × 10−14	OsHAK1	potassium transporter
m.54443	6.08	2.32	2.18	3.53 × 10−11	OsHAK1	potassium transporter
m.68120	1.64	0.1	0.01	2.64 × 10−13	OsCYP2	peptidyl-prolyl cis/trans isomerase; cyclophilin 2
m.76341	92.1	52.3	37.69	4.99 × 10−12	OsiSAP8	O. sativa subspecies indica stress-associated protein
m.159577	21.6	54.4	29.45	4.17 × 10−5	Oshox22	Homeobox-leucine zipper protein HOX22
m.6654	0.27	2.23	0.23	0.00027	OsLEA3-2	late embryogenesis abundant protein
m.68132	2.73	0.21	1.2	0.00011	OsKAT1	potassium channel
m.83942	9.49	22.9	13.8	1.66 × 10−17	OsGMST1	Golgi-localized monosaccharide transporter

#FDR: false discovery rate; the FDR threshold is 0.001.