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. 2016 Apr 27;17:190. doi: 10.1186/s12859-016-1057-y

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© Ryan et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — The target site prediction module. Predicted miRNA target sites within input and mutant sequences are identified using a custom component that identifies predicted target sites based on complementarity to the miRNA 5’ end. FASTA-format miRNA sequence data was collected from miRBase version 21 [11]. Information about predicted sites present in each mutant sequence that are absent from the input sequence are stored in a database for analysis