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. Author manuscript; available in PMC: 2017 Apr 28.
Published in final edited form as: J Med Chem. 2015 Nov 9;59(8):3609–3634. doi: 10.1021/acs.jmedchem.5b01457

Table 1. Structures of the MK2 kinase and its complexes stored in the PDB.

PDB entry
Release date
Chain Solved
sequence/
Protein
Constructa
Resolutionb Ligand Binding modec Reference
1kwp
2002-09-18
A, B 46-385
47-400
2.80 Å apoenzyme 36
no PDB entry
2003
45-371 3.0 Å graphic file with name nihms-735690-t0007.jpg graphic file with name nihms-735690-t0008.jpg 37
1ny3
2003-10-14
A 46-345
41-364
3.00 Å ADP see Figure 2 35
1nxk
2003-10-14
A, B, C, D 42-345
41-364
2.70 Å graphic file with name nihms-735690-t0009.jpg graphic file with name nihms-735690-t0010.jpg 35
2okr
2007-02-06
C, F (MK2)
A, D (p38α)
370-393
370-400
2.0 Å p38α-MK2 heterodimer 31
2onl
2007-02-06
C, D (MK2)
A, B (p38α)
46-393
Full length
4.0 Å p38α-MK2 heterodimer 31
2jbod
2007-03-20
A 44-347
41-364
3.10 Å graphic file with name nihms-735690-t0011.jpg graphic file with name nihms-735690-t0012.jpg 63
2jbpe
2007-03-20
A, B, C, D, E,
F, G, H, I, J,
K, L
46-350
41-364
3.31 Å graphic file with name nihms-735690-t0013.jpg graphic file with name nihms-735690-t0014.jpg 63
2oza
2007-04-03
A (MK2)
B (p38α)
51-390
47-400
2.70 Å p38α-MK2 heterodimer 30
2p3g
2007-06-12
X 45-364
45-371
3.80 Å graphic file with name nihms-735690-t0015.jpg graphic file with name nihms-735690-t0016.jpg 46
2pzy
2007-07-31
A, B, C, D 42-346
41-364
2.90 Å graphic file with name nihms-735690-t0017.jpg graphic file with name nihms-735690-t0018.jpg 60
3fpm
2009-04-07
A 44-345
41-364
3.30 Å graphic file with name nihms-735690-t0019.jpg graphic file with name nihms-735690-t0020.jpg 77
3fyk
2009-04-07
X 45-364
45-371
3.50 Å graphic file with name nihms-735690-t0021.jpg graphic file with name nihms-735690-t0022.jpg 51
3fyj
2009-04-07
X 45-364
45-371
3.80 Å graphic file with name nihms-735690-t0023.jpg graphic file with name nihms-735690-t0024.jpg 52
3kc3
2010-01-12
A, B, C, D, E,
F, G, H, I, J,
K, L
43-347
41-364
2.90 Å graphic file with name nihms-735690-t0025.jpg graphic file with name nihms-735690-t0026.jpg 42
3ka0
2010-01-12
A 47-364
47-366f
2.90 Å graphic file with name nihms-735690-t0027.jpg graphic file with name nihms-735690-t0028.jpg 42
3kga
2010-01-26
A 47-364
47-364
2.55 Å graphic file with name nihms-735690-t0029.jpg graphic file with name nihms-735690-t0030.jpg 43
3gok
2010-03-02
A, B, C, D, E,
F, G, H, I, J,
K, L
46-350
47-400
3.20 Å graphic file with name nihms-735690-t0031.jpg unpublished
resultsg
3a2c
2010-05-12
A, B, C, D, E,
F, G, H, I, J,
K, L
47-344
41-364
2.90 Å graphic file with name nihms-735690-t0032.jpg graphic file with name nihms-735690-t0033.jpg 38
3m2w
2010-07-28
A 47-364
47-364
2.41 Å graphic file with name nihms-735690-t0034.jpg graphic file with name nihms-735690-t0035.jpg 73
3m42
2011-03-23
A 47-364
47-364
2.68 Å graphic file with name nihms-735690-t0036.jpg graphic file with name nihms-735690-t0037.jpg 72
3r2y
2011-05-25
A 46-365
41-364
3.00 Å graphic file with name nihms-735690-t0038.jpg graphic file with name nihms-735690-t0039.jpg 64
3r30
2011-05-25
A 46-365
41-364
3.20 Å graphic file with name nihms-735690-t0040.jpg graphic file with name nihms-735690-t0041.jpg 64
3r2b
2011-05-25
A, B, C, D, E,
F, G, H, I, J,
K, L
47-345
41-364
2.90 Å graphic file with name nihms-735690-t0042.jpg graphic file with name nihms-735690-t0043.jpg 64
3wi6
2013-12-18
A, B, C, D, E,
F
46-347
41-364
3.00 Å graphic file with name nihms-735690-t0044.jpg graphic file with name nihms-735690-t0045.jpg 40
4tyh
2015-07-22
A (MK2)
B (p38α)
51-400 3.00 Å p38-MK2 heterodimer with
a p38 inhibitor
101
a

When more than one MK2 chain has been crystallized, the solved sequence and protein construct are referred to the first chain listed in the previous column. Solved sequence: the amino acid sequence listed in the PDB structure. Protein construct: the MK2 protein construct used in the study.

b

All the structures have been obtained by X-ray diffraction.

c

Graphical representations of the binding mode of MK2 inhibitors have been elaborated with Discovery Studio 3.0 Visualizer software (Accelrys Software, Inc.) by the corresponding PDB files. The coordinates of the complex between MK2 and AMP-PNP have been taken from the patent text (https://www.google.com.ar/patents/EP1578687A2?cl=en, accessed August 7, 2015), edited to correct typos probably due to a previous scanning from original patent documents, and then converted to a PDB file by means of an in house script.

d

Bipyramidal crystals, by soaking.

e

Orthorhombic crystals, by co-crystallyzation

f

T222E mutant.

g

Scheich, C.; Smith, M. A.; Barker, J. D.; Kahmann, J.; Hesterkamp, T.; Schade, M. Unpublished results.