Table 1. Identification and characterization of proteins differently expressed in Obese hA-MSCs vs Non-obese hA-MSCs.
Spot no.a | DIGE Obese/Non-obese hAMSCsb | DIGE (P-value)c | Protein name | Gene Symbold | MW (Da)e | PIf | Gene IDg | Protein codeh |
---|---|---|---|---|---|---|---|---|
3114 | 1.96 | 0.029 | Annexin A5 | ANXA5 | 35936 | 4.93 | 308 | P08758 |
873 | 1.86 | 0.024 | Alpha-actinin-1 | ACTN1 | 103057 | 5.25 | 87 | P12814 |
2710 | 1.77 | 0.031 | Serpin B6 | SERPINB6 | 42621 | 5.18 | 5269 | P35237 |
2748 | 1.77 | 0.031 | Annexin A1 | ANXA1 | 38714 | 6.57 | 301 | P04083 |
3711 | 1.66 | 0.0037 | Ubiquitin carboxyl-terminal hydrolase isozyme L1 | UCHL1 | 24824 | 5.33 | 7345 | P09936 |
1536 | 1.63 | 0.026 | Myosin-9 | MYH9 | 226532 | 5.50 | 4627 | P35579 |
LIM domain and actin-binding protein 1 | LIMA1 | 85225 | 6.41 | 51474 | Q9UHB6 | |||
489 | 1.59 | 0.022 | Filamin-A | FLNA | 280739 | 5.70 | 2316 | P21333 |
Filamin-B | FLNB | 278164 | 5.47 | 2317 | O75369 | |||
662 | 1.49 | 0.00067 | Heat shock protein 105 kDa | HSPH1 | 96864 | 5.27 | 10808 | Q92598 |
3335 | 1.49 | 0.041 | Prohibitin | PHB | 29804 | 5.57 | 5245 | P35232 |
660 | 1.47 | 0.0099 | Programmed cell death 6-interacting protein | PDCD6IP | 96023 | 6.13 | 10015 | Q8WUM4 |
2879 | 1.47 | 0,0042 | Elongation factor 1-delta | EEF1D | 31121 | 4.90 | 1936 | P29692 |
2730 | 1.47 | 0.049 | Heterogeneous nuclear ribonucleoprotein A1 | HNRNPA1 | 38746 | 9.17 | 3178 | P09651 |
522 | 1.44 | 0.0018 | Protein phosphatase 1 regulatory subunit 12A | PPP1R12A | 115281 | 5.31 | 4659 | O14974 |
1823 | 1.41 | 0.036 | Dihydropyrimidinase-related protein 3 | DPYSL3 | 61963 | 6.04 | 1809 | Q14195 |
Prelamin-A/C | LMNA | 74139 | 6.57 | 4000 | P02545 | |||
T-complex protein 1 subunit zeta | CCT6A | 58024 | 6.24 | 908 | P40227 | |||
2813 | 1.40 | 0.022 | Annexin A2 | ANXA2 | 38604 | 7.57 | 302 | P07355 |
LIM and SH3 domain protein 1 | LASP1 | 29717 | 6.61 | 3927 | Q14847 | |||
521 | 1.39 | 0.0012 | Protein phosphatase 1 regulatory subunit 12A | PPP1R12A | 115281 | 5.31 | 4659 | O14974 |
1047 | 1.38 | 0.0056 | Myosin-9 | MYH9 | 226532 | 5.50 | 4627 | P35579 |
Transitional endoplasmic reticulum ATPase | VCP | 89265 | 5.14 | 7415 | P55072 | |||
492 | 1.37 | 0.0056 | Filamin-A | FLNA | 280739 | 5.70 | 2316 | P21333 |
Filamin-B | FLNB | 278164 | 5.47 | 2317 | O75369 | |||
2925 | 1.37 | 0.053 | Annexin A2 | ANXA2 | 38604 | 7.57 | 302 | P07355 |
LIM and SH3 domain protein 1 | LASP1 | 29717 | 6.61 | 3927 | Q14847 | |||
574 | 1.33 | 0.040 | Ribosome-binding protein 1 | RRBP1 | 152472 | 8.69 | 6238 | Q9P2E9 |
1996 | 1.32 | 0.049 | Vimentin | VIM | 53651 | 5.05 | 7431 | P08670 |
452 | 1.28 | 0.0017 | Nodal modulator 1 | NOMO1 | 134324 | 5.54 | 23420 | Q15155 |
918 | 1.27 | 6.4e–005 | Ubiquitin-like modifier-activating enzyme 1 | UBA1 | 117849 | 5.49 | 7317 | P22314 |
Alpha-actinin-1 | ACTN1 | 103057 | 5.25 | 87 | P12814 | |||
Alanine-tRNA ligase, mitochondrial | AARS2 | 107340 | 5.87 | 57505 | Q5JTZ9 | |||
1395 | 1.27 | 0.0018 | ATP-dependent 6-phosphofructokinase, platelet type | PFKP | 85596 | 7.50 | 5214 | Q01813 |
Protein transport protein Sec23A | SEC23A | 86160 | 6.64 | 10484 | Q15436 | |||
3408 | 1.26 | 0.0013 | 40S ribosomal protein SA | RPSA | 32854 | 4.79 | 3921 | P08865 |
1866 | 1.26 | 0.022 | Pyruvate kinase PKM | PKM | 57937 | 7.96 | 5315 | P14618 |
2861 | 1.26 | 0.049 | Annexin A2 | ANXA2 | 38604 | 7.57 | 302 | P07355 |
2955 | 1.25 | 0.038 | LIM and SH3 domain protein 1 | LASP1 | 29717 | 6.61 | 3927 | Q14847 |
1476 | 1.23 | 0.0029 | Stress-70 protein, mitochondrial | HSPA9 | 73680 | 5.87 | 3313 | P38646 |
Annexin A6 | ANXA6 | 75873 | 5.41 | 309 | P08133 | |||
604 | 1.23 | 0.0032 | ATP-citrate syntase | ACLY | 120839 | 6.95 | 47 | P53396 |
Leucine—tRNA ligase,cytoplasmic | LARS | 134466 | 6.95 | 51520 | Q9P2J5 | |||
279 | 1.23 | 0.014 | Pyruvate kinase PKM | PKM | 57937 | 7.96 | 5315 | P14618 |
903 | 1.22 | 0.0011 | Staphylococcal nuclease domain-containing protein 1 | SND1 | 101996 | 6.74 | 27044 | Q7KZF4 |
2769 | 1.22 | 0.016 | Eukaryotic translation initiation factor 3, subunit I | EIF3I | 36501 | 5.38 | 8668 | Q13347 |
456 | 1.21 | 0.0005 | Leucine-rich PPR motif-containing protein, mitochondrial | LRPRRC | 157905 | 5.81 | 10128 | P42704 |
1874 | 1.21 | 0.018 | Pyruvate kinase PKM | PKM | 57937 | 7.96 | 5315 | P14618 |
1236 | 1.20 | 0.0079 | LIM domainand actin-binding protein 1 | LIMA1 | 85225 | 6.41 | 51474 | Q9UHB6 |
1017 | 1.20 | 0.019 | Programmed cell death 6-interacting protein | PDCD6IP | 96023 | 6.13 | 10015 | Q8WUM4 |
Hexokinase-1 | HK1 | 102485 | 6.36 | 3098 | P19367 | |||
2770 | −6.13 | 0.041 | Annexin A1 | ANXA1 | 38714 | 6.57 | 301 | P04083 |
3162 | −3.34 | 0.041 | Chloride intracellular channel protein 1 | CLIC1 | 26922 | 5.09 | 1192 | O00299 |
3248 | −2.21 | 0.051 | S-methyl-5′-thioadenosine phosphorylase | MTAP | 31236 | 6.75 | 4507 | Q13126 |
1385 | −2.05 | 0.019 | 78 kDa glucose-regulated protein | HSPA5 (Grp78) | 72332 | 5.07 | 3309 | P11021 |
3412 | −1.93 | 0.0030 | Heat shock protein beta-1 | HSPB1 (HSP27) | 22782 | 5.98 | 3315 | P04792 |
3452 | −1.70 | 0.00024 | Heat shock protein beta-1 | HSPB1 (HSP27) | 22782 | 5.98 | 3315 | P04792 |
3794 | −1.59 | 0.031 | Chain A, Three-Dimensional Structure Of Class Pi Glutathione S-Transferase From Human Placenta (Glutathione S-transferase P) | GSTP1 | 23355 | 5.43 | 2950 | P09211 |
2345 | −1.55 | 0.048 | 6-phosphogluconate dehydrogenase, decarboxylating | PGD | 53139 | 6.8 | 5226 | P52209 |
2606 | −1.42 | 0.029 | Fructose-bisphosphate aldolase C | ALDOC | 39455 | 6.41 | 230 | P09972 |
Mitochondrial import receptor subunit TOM40 homolog | TOMM40 | 37893 | 6.79 | 10452 | O96008 | |||
2326 | −1.41 | 0.0093 | Serpin H1 | SERPINH1 | 46440 | 8.75 | 871 | P50454 |
798 | −1.39 | 0.046 | Lon protease homolog, mitochondrial | LONP1 | 106489 | 6.01 | 9361 | P36776 |
1243 | −1.37 | 0.0038 | Ran GTPase-activating protein 1 | RANGAP1 | 63541 | 4.63 | 5905 | P46060 |
2090 | −1.36 | 0.041 | Alpha-aminoadipic semialdehyde dehydrogenase | ALDH7A1 | 58487 | 8.21 | 501 | P49419 |
RuvB-like 1 | RUVBL1 | 50228 | 6.02 | 8607 | Q9Y265 | |||
2125 | −1.35 | 0.017 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial | DLST | 48755 | 9.10 | 1743 | P36957 |
1245 | −1.35 | 0.023 | Caldesmon | CALD1 | 93231 | 5.62 | 800 | Q05682 |
1310 | −1.31 | 0.035 | Protein disulfide-isomerase A4 | PDIA4 | 72932 | 4.96 | 9601 | P13667 |
Acylamino-acid-relasing enzyme | APEH | 81224 | 5.29 | 327 | P13798 | |||
829 | −1.30 | 0.028 | Endoplasmin | HSP90B1 (Grp94) | 92468 | 4.76 | 7184 | P14625 |
1408 | −1.28 | 0.00018 | 79 kDa glucose-regulated protein | HSPA5 (Grp78) | 72332 | 5.07 | 3309 | P11022 |
2258 | −1.26 | 0.028 | Alpha-enolase | ENO1 | 47168 | 7.01 | 2023 | P06733 |
6-phosphogluconate dehydrogenase, decarboxylating | PGD | 53139 | 6.8 | 5226 | P52209 | |||
1327 | −1.23 | 0.014 | Protein disulfide-isomerase A4 | PDIA4 | 72932 | 4.96 | 9601 | P13667 |
Prolyl endopeptidase | PREP | 80699 | 5.53 | 5550 | P48147 | |||
2621 | −1.23 | 0.049 | Actin, cytoplasmic 2 | ACTG1 | 41792 | 5.31 | 71 | P63261 |
COP9 signalosome complex subunit 4 | COPS4 | 46268 | 5.57 | 51138 | Q9BT78 | |||
1786 | −1.22 | 0.0028 | 60 kDa heat shock protein, mitochondrial | HSPD1 (HSP60) | 61054 | 5.70 | 3329 | P10809 |
1377 | −1.21 | 0.049 | 78 kDa glucose-regulated protein | HSPA5 (Grp78) | 72332 | 5.07 | 3309 | P11021 |
Heat shock cognate 71 kDa protein | HSPA8 | 70898 | 5.37 | 3312 | P11142 |
aSpot numbering to indicate the positions of spots in preparative gel.
bAverage abundance ratio (Obese/Non-obese hA-MSCs) as calculated by DeCyder Analysis.
cP-value at Student’s t test.
dGene symbol from NCBI.
eTheoretical molecular weight (Da).
fTheoretical pI.
gGene ID from NCBI.
hProtein code from Swiss Prot.