Table 2.
Genes regulated by CSF2 in trophectoderm after adjustment for a false discovery rate of 2 %
| Gene symbol or description | Mean counts, control | Mean counts, CSF2 | Fold change, CSF2/control | Adjusted P value |
|---|---|---|---|---|
| Upregulated | ||||
| CLIC6 | 0 | 6.7 | – | 0.025 |
| OR5AN1 | 0.6 | 9.7 | 16.22 | 0.021 |
| CSN3 | 42.4 | 554.8 | 13.08 | 0.000 |
| Uncharacterized (ENSBTAG00000033304) | 11.1 | 127.5 | 11.46 | 0.000 |
| Exocyst complex component 1-like (LOC100335745) | 1.2 | 9.9 | 8.09 | 0.049 |
| Uncharacterized (ENSBTAG00000040552) | 2.9 | 20.8 | 7.19 | 0.012 |
| HPCAL4 | 427.9 | 2667.1 | 6.23 | 0.000 |
| CCDC146 | 12.9 | 70.3 | 5.43 | 0.000 |
| DEAD/H box polypeptide 26B-like (LOC100138355) | 7.4 | 34.9 | 4.72 | 0.002 |
| Uncharacterized (LOC100335677) | 17.2 | 68.7 | 3.99 | 0.012 |
| TKTL1 | 64.6 | 205.7 | 3.18 | 0.001 |
| FOS | 344.1 | 775.3 | 2.25 | 0.042 |
| DUSP1 | 897.1 | 1959.3 | 2.18 | 0.008 |
| SHE | 216.5 | 445.6 | 2.06 | 0.018 |
| Downregulated | ||||
| SLC25A40-like (LOC510700) | 451.6 | 179.4 | 0.40 | 0.045 |
| AKAP4 | 104.7 | 30.0 | 0.29 | 0.004 |
| MUC1 | 284.2 | 73.8 | 0.26 | 0.000 |
| VAV3 | 43.1 | 10.3 | 0.24 | 0.003 |
| VAV3 | 52.6 | 11.5 | 0.22 | 0.002 |
| VAV3 | 34.1 | 7.0 | 0.21 | 0.001 |
| PAQR7 | 341.6 | 20.1 | 0.06 | 0.000 |
| NPY1R | 333.9 | 18.8 | 0.06 | 0.000 |
| Interferon regulatory factor-like (ENSBTAG00000031214) | 26.4 | 1.4 | 0.05 | 0.000 |