Table 2.
Patient | 10× cov. (%) | Mean cov. | Yield (Gb) | Q30 | MeanQ | Filtered vars | PURA mean CDS cov. | Var. total fam. cov. | Samples | Mean per-sample var. cov. |
---|---|---|---|---|---|---|---|---|---|---|
1 | 98.57 | 122 | 14.6 | 88 | 34 | 4973 | 105 | 491 | 3 | 164 |
2 | 98.79 | 166 | 12.5 | 94 | 36 | 4057 | 128 | 721 | 3 | 240 |
3 | 98.61 | 165 | 11.6 | 95 | 37 | 4475 | 143 | 63 | 3 | 21 |
4 | 98.71 | 201 | 14.6 | 88 | 35 | 4613 | 149 | 811 | 3 | 270 |
5 | 98.45 | 155 | 11.1 | 93 | 36 | 4504 | 125 | 41 | 3 | 14 |
6 | 97.22 | 122 | 12.3 | 91 | 36 | 5445 | 70 | 244 | 3 | 81 |
Mean | 98.39 | 155 | 13 | 92 | 36 | 4678 | 120 | 395 | 3 | 132 |
cov., coverage; CDS, coding sequence; var., variance; fam, family.