TABLE V.
Association Between Candidate Risk SNPs (SNPs With Subthreshold Effects on Suicidal Behavior, Suicide Death, and/or MDD in Part 1 of This Project) and Expression of All the Exon-Specific Probesets on the Same Gene in the Frontal Cortex in UKBEC (a Distinct Postmortem Sample, n = 134; Only the Minimal P-Values for Each SNP Are Listed Below)
| Gene | SNP | tID | exprID | Chromosome | P-value |
|---|---|---|---|---|---|
| GABBR2 | rs10739615 | 3217242 | 3217252 | chr9 | 0.08 |
| rs2808536 | 3217242 | 3217244 | chr9 | 0.13 | |
| GABRA4 | rs12506608 | 2768056 | 2768077 | chr4 | 0.32 |
| rs6447520 | 2768056 | 2768078 | chr4 | 0.10 | |
| GABRA5 | rs140685 | 4039130 | 4039145 | chr15 | 0.34 |
| GABRB3 | rs8041610 | 3614534 | 3614564 | chr15 | 0.07 |
| GABRD | rs13303016 | 4054481 | 4054487 | chr1 | 0.25 |
| GABRG1 | rs976156 | 2767932 | 2767935 | chr4 | 0.05 |
| GABRG2 | rs424740 | 2838462 | 2838490 | chr5 | 0.02 |
| GLS | rs13035504 | 2520291 | 2520317 | chr2 | 0.15 |
| GRIK1 | rs363527 | 3928211 | 3928280 | chr21 | 0.09 |
| GAD2 | rs2236418 | 3239667 | 3239676 | chr10 | 0.01 |
| SLC1A2 | rs10836356 | 3369366 | 3369378 | chr11 | 0.04 |
| GRIA2 | rs6849345 | 2749222 | 2749255 | chr4 | 0.40 |
| GRIN2A | rs1420040 | 3679812 | 3679818 | chr16 | 0.13 |
| rs3785185 | 3679812 | 3679833 | chr16 | 0.11 | |
| rs4780886 | 3679809 | 3679811 | chr16 | 0.15 | |
| SLC1A3 | rs1529461 | 2806643 | 2806657 | chr5 | 0.30 |
| SLC6A1 | rs1062246 | 2610631 | 2610649 | chr3 | 0.07 |
Bold values indicate P < 0.05 uncorrected.
tID, The tID is the transcript cluster ID from Affymetrix; exprID, The exprID is the Probe Set ID from Affymetrix.