Table 1.
Protein mixture | Number of proteins groups identified with in-solution digestion |
Number of proteins groups identified with IMER |
Enzyme immobilized |
Database search engine |
---|---|---|---|---|
Mouse serum std | 137 | 106 | Trypsin/LysC | Mascot |
Yeast lysate | 487 | 445 | Trypsin/LysC | PD |
Yeast lysate | 473 | 368 | LysN | Mascot |
Human lysate | 207 | 216 | Trypsin/LysC | PD |
IMER digestion time was 5 min at room temperature. LC-MS/MS analysis for in-solution and IMER digestion was identical and parameters were described in apparatus session with same protein loading amount of 300 ng.