Table 2. Strain-mean QTL mapping results of light-dark box phenotypes.
Suggestive (p-value < 0.63) and significant (p-value < 0.05; bolded) QTL identified by single locus genome scans of strain-mean phenotypes. Support intervals define regions with a 97% probability of harboring the true QTL.
| Phenotype | Peak marker | Chr | Location | LOD | p-value | Support interval |
|---|---|---|---|---|---|---|
| Saline TLA | rs3696645 | 1 | 159.9 | 3.99 | 3.0e-02 | 147.39 to 184.42 |
| rs3689326 | 9 | 53.77 | 2.39 | 5.2e-01 | 29.75 to 106.32 | |
| Ethanol TLA | UT_1_113.684537 | 1 | 157.9 | 3.71 | 1.5e-02 | 147.39 to 184.42 |
| rs3675564 | 2 | 164.2 | 2.48 | 3.7e-01 | 9.75 to 172.85 | |
| rs13481014 | 11 | 47.93 | 2.16 | 6.2e-01 | 4.41 to 120.82 | |
| rs4231742 | 18 | 11.08 | 2.68 | 2.5e-01 | 3.52 to 86.75 | |
|
| ||||||
| Saline DTL | D1Mit139 | 1 | 128.4 | 2.41 | 5.6e-01 | 29.23 to 184.42 |
| gnf06.140.234 | 6 | 140.1 | 2.74 | 3.7e-01 | 16.01 to 149.21 | |
| rs13481251 | 11 | 116.9 | 2.7 | 4.0e-01 | 8.74 to 121.41 | |
| Ethanol DTL | rs13474399 | 1 | 182.5 | 2.59 | 4.5e-01 | 13.98 to 197.13 |
| rs3716547 | 12 | 68.67 | 4.32 | 2.7e-02 | 53.91 to 71.66 | |
|
| ||||||
| Saline TSL | rs13476098 | 1 | 128.5 | 3.35 | 9.8e-02 | 96.87 to 169.91 |
| rs13481251 | 11 | 116.9 | 3.75 | 4.1e-02 | 114.53 to 120.82 | |
| Ethanol TSL | rs13474399 | 1 | 182.5 | 2.9 | 2.8e-01 | 14.79 to 190.74 |
| rs3716547 | 12 | 68.67 | 4.37 | 2.3e-02 | 53.91 to 71.66 | |