Table 1. Characterization of nuclear loci and mitochondrial genome for phylogenetic analyses.
Locus | Length | Inform-ative | Variable | CI | RI | Best model | Alpha |
---|---|---|---|---|---|---|---|
ALB3 | 809 | 2 | 29 | 0.9688 | 0.8750 | HKY | N/A |
IRBP3 | 1561 | 19 | 76 | 0.9796 | 0.9545 | TVM | N/A |
TNP2 | 815 | 10 | 79 | 0.9663 | 0.8000 | GTR+G | 0.1464 |
TTR1 | 743 | 1 | 29 | 0.9818 | 0.7857 | TVM+I | N/A |
vWF11 | 945 | 3 | 42 | 1.0000 | 1.0000 | TrN | N/A |
Com autosome | 4973 | 35 | 255 | 0.9597 | 0.7105 | TVM+I+G | 0.1459 |
X chromosome | 1498 | 6 | 21 | 1.0000 | 1.0000 | TVM+I+G | N/A |
SRY | 770 | 6 | 23 | 1.0000 | 1.0000 | TVM | N/A |
TSPY | 2224 | 23 | 75 | 0.9870 | 0.9688 | GTR | N/A |
Com Y chromosome | 2994 | 29 | 98 | 0.9892 | 0.9722 | GTR+I+G | N/A |
Com nuclear genome | 9465 | 70 | 374 | 0.9636 | 0.8171 | TVM+I+G | 0.0774 |
ATP6 | 678 | 132 | 258 | 0.6797 | 0.4739 | TrN+G | 0.3200 |
ATP8 | 198 | 42 | 81 | 0.7016 | 0.5375 | TrN+I | N/A |
COX1 | 1539 | 241 | 436 | 0.6539 | 0.4404 | HKY+G | 0.1900 |
COX2 | 681 | 108 | 189 | 0.6472 | 0.4577 | TIM+G | 0.1330 |
COX3 | 783 | 116 | 243 | 0.7378 | 0.5309 | TPM2uf+G | 0.3310 |
CYTB | 1141 | 184 | 344 | 0.6619 | 0.4388 | TrN+G | 0.1710 |
ND1 | 948 | 142 | 277 | 0.6857 | 0.4923 | HKY+G | 0.2270 |
ND2 | 1038 | 155 | 325 | 0.7231 | 0.5092 | TrN+G | 0.2600 |
ND3 | 345 | 59 | 121 | 0.7500 | 0.5591 | TrN+I | N/A |
ND4 | 1378 | 252 | 477 | 0.6576 | 0.4325 | TrN+I | N/A |
ND4L | 294 | 47 | 100 | 0.7034 | 0.4756 | TrN+I | N/A |
ND5 | 1809 | 281 | 585 | 0.7064 | 0.4667 | TPM2uf+G | 0.3100 |
Com Mt | 10832 | 1759 | 3436 | 0.6822 | 0.4610 | TIM2+G | 0.2470 |
Total datasets | 20297 | 1829 | 3810 | - | - | - |
CI: consistency index; RI: retention index; Best model: best fitting model under the Akaike information criterion; Alpha: gamma distribution shape parameter; Mt: mitochondrial genome.