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. 2016 May 2;11(5):e0154665. doi: 10.1371/journal.pone.0154665

Table 1. Characterization of nuclear loci and mitochondrial genome for phylogenetic analyses.

Locus Length Inform-ative Variable CI RI Best model Alpha
ALB3 809 2 29 0.9688 0.8750 HKY N/A
IRBP3 1561 19 76 0.9796 0.9545 TVM N/A
TNP2 815 10 79 0.9663 0.8000 GTR+G 0.1464
TTR1 743 1 29 0.9818 0.7857 TVM+I N/A
vWF11 945 3 42 1.0000 1.0000 TrN N/A
Com autosome 4973 35 255 0.9597 0.7105 TVM+I+G 0.1459
X chromosome 1498 6 21 1.0000 1.0000 TVM+I+G N/A
SRY 770 6 23 1.0000 1.0000 TVM N/A
TSPY 2224 23 75 0.9870 0.9688 GTR N/A
Com Y chromosome 2994 29 98 0.9892 0.9722 GTR+I+G N/A
Com nuclear genome 9465 70 374 0.9636 0.8171 TVM+I+G 0.0774
ATP6 678 132 258 0.6797 0.4739 TrN+G 0.3200
ATP8 198 42 81 0.7016 0.5375 TrN+I N/A
COX1 1539 241 436 0.6539 0.4404 HKY+G 0.1900
COX2 681 108 189 0.6472 0.4577 TIM+G 0.1330
COX3 783 116 243 0.7378 0.5309 TPM2uf+G 0.3310
CYTB 1141 184 344 0.6619 0.4388 TrN+G 0.1710
ND1 948 142 277 0.6857 0.4923 HKY+G 0.2270
ND2 1038 155 325 0.7231 0.5092 TrN+G 0.2600
ND3 345 59 121 0.7500 0.5591 TrN+I N/A
ND4 1378 252 477 0.6576 0.4325 TrN+I N/A
ND4L 294 47 100 0.7034 0.4756 TrN+I N/A
ND5 1809 281 585 0.7064 0.4667 TPM2uf+G 0.3100
Com Mt 10832 1759 3436 0.6822 0.4610 TIM2+G 0.2470
Total datasets 20297 1829 3810 - - -

CI: consistency index; RI: retention index; Best model: best fitting model under the Akaike information criterion; Alpha: gamma distribution shape parameter; Mt: mitochondrial genome.