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. 2016 May 2;11(5):e0149675. doi: 10.1371/journal.pone.0149675

Table 1. Mean results of the simulation.

In bold–the best performance amongst all the methods.

Scenario
ρ Method 1 2 3 4 1 2 3 4 1 2 3 4
Sensitivity of feature selection Specificity of feature selection Accuracy of classification (test set)
Lasso 0.966 0.798 0.344 0.361 0.996 0.968 0.967 0.966 89.26% 81.47% 84.76% 80.26%
L1/2 0.971 0.888 0.411 0.355 0.998 0.974 0.975 0.970 92.05% 82.22% 85.11% 81.45%
0.3 SCAD − L2 1.000 0.913 0.722 0.674 0.995 0.928 0.890 0.723 93.21% 82.90% 84.51% 82.51%
EN 0.997 0.916 0.737 0.662 0.994 0.926 0.886 0.735 91.03% 81.34% 84.47% 80.27%
HLR 1.000 0.924 0.791 0.708 0.999 0.931 0.892 0.769 95.27% 82.66% 84.99% 85.05%
Lasso 0.887 0.723 0.351 0.270 0.995 0.975 0.981 0.923 94.24% 84.10% 91.88% 85.88%
L1/2 0.755 0.630 0.275 0.220 1.000 0.974 0.988 0.928 95.90% 86.50% 90.20% 84.20%
0.6 SCAD − L2 1.000 0.866 0.800 0.629 1.000 0.949 0.929 0.849 96.33% 86.43% 89.20% 93.03%
EN 1.000 0.854 0.795 0.621 1.000 0.953 0.939 0.837 96.22% 86.41% 92.12% 91.01%
HLR 1.000 0.875 0.816 0.636 1.000 0.968 0.942 0.841 99.53% 87.16% 92.71% 92.82%
Lasso 0.548 0.548 0.174 0.145 0.938 0.972 0.987 0.934 96.05% 86.79% 93.22% 91.15%
L1/2 0.337 0.495 0.159 0.139 0.999 0.977 0.991 0.944 97.89% 87.90% 93.70% 92.70%
0.9 SCAD − L2 1.000 0.872 0.809 0.636 1.000 0.954 0.952 0.861 97.28% 88.60% 93.70% 93.19%
EN 1.000 0.856 0.818 0.622 0.995 0.951 0.949 0.875 98.22% 88.14% 93.52% 93.82%
HLR 1.000 0.897 0.824 0.645 1.000 0.966 0.956 0.880 99.87% 89.40% 94.76% 94.40%

Mean results are based on 500 repeats. The sensitivity and specificity are both dedicated to measures the quality of the selected features, the accuracy evaluates the classification performance of the different regularization approaches on the test sets.