Table 1. The candidate COGs interacting with circadian enhancers via invariant cohesin-mediated loops.
Gene Symbol | Circadian Phase (CT) | Transcription Factor | Transcription Factor binding site position (kb) | Cohesin KO-CN Log2-Fold-Change (LFC) |
---|---|---|---|---|
Tmtc2 | 11 | Bmal1 | 200 | -2.5 |
Rnf43 | 7.5 | Bmal1 | 39 | -1.5 |
Phldb2 | 7 | Bmal1 | 126 | -1.1 |
Cdo1 | 6 | Bmal1 | -130, -121 | -1.2 |
Kcnb1 | 11 | Bmal1 | -128 | -1 |
Atr | 11 | Bmal1 | -317,-315,-305 | -1.4 |
1200009I06Rik | 23.5 | Nr1d1 | -30 | -0.8 |
Ahnak | 20.5 | Nr1d1 | 106, 108, 131 | -0.9 |
Dapk1 | 23.5 | Nr1d1 | -121, -116, 129, 135 | -1.2 |
Npas2 | 1 | Nr1d1 | -179, -169 | -1.1 |