Table 3.
Results of the multifactor dimension reduction analysis showing the best model of all possible 1- to 5-loci interactions and their outcome parameters
Model | Training accuracy* | Testing accuracy† | CVC‡ | p value§ |
---|---|---|---|---|
rs1800795 | 0.561 | 0.561 | 100/100 | 0.46 |
rs2272676–rs3027898 | 0.586 | 0.420 | 63/100 | > 0.99 |
rs1800795–rs2272676–rs3027898 | 0.616 | 0.421 | 61/100 | 0.39 |
rs1800795–rs7744–rs2272676–rs3027898 | 0.661 | 0.406 | 44/100 | 0.99 |
rs1800795–rs7744–rs2272676–rs1143627–rs3027898¶ | 0.721 | 0.602 | 100/100 | 0.020 |
CVC = cross-validation consistency.
Accuracy in the 100-fold training data set.
Accuracy in the 100-fold testing data set.
100-fold CVC.
p value of the best model corrected by 1000 permutations.
Odds ratio 6.9 (95% confidence interval 4.4–10.6), p < 0.001, sensitivity 76.9%, specificity 67.3%, accuracy 72.1%, precision 69.9%.