Skip to main content
. 2016 May 3;7:582. doi: 10.3389/fmicb.2016.00582

Table 2.

Mean abundances of bacterial taxa present at >0.1% of total ruminal sequences which were significantly different (P < 0.05) between pre- vs. post-weaned calves1.

Phylum Taxa2 Pre-weaning Post-weaning log2 FC SE3 P-value4
Actinobacteria g. Bifidobacterium 0.080 0.085 -2.24 0.594 <0.001
Bacteroidetes f. [Barnesiellaceae] 0.066 0.002 -3.43 0.722 <0.001
g. Butyricimonas 0.647 0.051 -4.12 0.411 <0.001
g. Odoribacter 0.078 0.004 -4.44 0.448 <0.001
g. CF231 0.896 0.235 -2.39 0.357 <0.001
f. [Paraprevotellaceae] 0.421 0.861 0.65 0.227 0.009
g. Bacteroides 3.62 0.863 -2.43 0.305 <0.001
g. BF311 0.063 0.006 -2.47 0.857 0.008
f. Bacteroidaceae 0.046 0.005 -4.53 0.541 <0.001
f. BS11 1.57 0.045 -1.76 0.653 0.013
o. Bacteroidales 16.5 6.07 -1.47 0.211 <0.001
f. p-2534-18B5 0.341 0.056 -3.43 0.813 <0.001
g. Parabacteroides 0.435 0.020 -4.51 0.402 <0.001
f. Prevotellaceae 0.124 0.051 -0.99 0.338 0.007
f. Rikenellaceae 0.207 0.009 -5.02 0.515 <0.001
g. Sphingobacterium 0.009 0.002 -2.14 0.676 0.004
Cyanobacteria o. Streptophyta 0.001 0.010 3.74 0.604 <0.001
Elusimicrobia g. Elusimicrobium 0.112 0.002 -4.64 0.886 <0.001
f. Elusimicrobiaceae 0.064 0.003 -2.72 0.741 <0.001
Fibrobacteres g. Fibrobacter 0.264 0.123 -1.48 0.540 0.012
Firmicutes f. Lactobacillaceae 0.008 0.031 2.66 0.514 <0.001
f. Streptococcaceae 0.089 0.003 -3.77 0.607 <0.001
g. Streptococcus 0.347 0.004 -3.16 0.558 <0.001
f. Christensenellaceae 0.229 0.020 -3.18 0.580 <0.001
g. Clostridium 0.064 0.003 -4.17 0.811 <0.001
g. Pseudoramibacter 0.006 0.075 3.12 1.026 0.005
g. Butyrivibrio 1.27 3.39 1.41 0.207 <0.001
g. Coprococcus 0.485 0.229 -1.00 0.333 0.006
f. Lachnospiraceae 1.60 2.54 0.89 0.180 <0.001
g. Pseudobutyrivibrio 0.011 0.005 -1.99 0.682 0.007
g. Shuttleworthia 0.477 1.68 4.22 0.403 <0.001
o. Clostridiales 1.39 1.35 -0.51 0.230 0.048
g. Anaerotruncus 0.008 0.004 -2.40 0.726 0.002
f. Ruminococcaceae 2.45 5.50 1.35 0.199 <0.001
g. Oscillospira 0.819 0.251 -1.84 0.234 <0.001
g. Ruminococcus 1.27 1.25 -1.50 0.284 <0.001
g. Acidaminococcus 0.076 0.118 3.77 0.540 <0.001
g. Dialister 0.158 1.33 4.34 0.404 <0.001
g. Megasphaera 0.452 0.634 2.34 0.394 <0.001
g. Mitsuokella 0.013 0.022 1.78 0.507 0.001
f. Veillonellaceae 0.557 1.59 2.28 0.327 <0.001
g. Succiniclasticum 0.365 0.218 -1.69 0.444 <0.001
o. Coriobacteriales 0.158 0.006 -3.94 0.522 <0.001
f. [Coprobacillaceae] 0.002 0.004 2.21 0.792 0.011
g. Sharpea 1.48 7.67 3.81 0.423 <0.001
g. [Eubacterium] 0.009 0.053 3.28 0.625 <0.001
g. Bulleidia 0.368 0.487 1.60 0.348 <0.001
g. L7A_E11 0.022 0.003 -2.57 0.557 <0.001
g. p-75-a5 0.056 0.012 -1.88 0.468 <0.001
o. ML615J-28 0.033 0.002 -2.14 0.868 0.024
Lentisphaerae f. Victivallaceae 0.007 0.001 -2.99 1.049 0.009
Proteobacteria f. Alcaligenaceae 0.043 0.010 -2.57 0.680 <0.001
g. Sutterella 0.094 0.015 -1.22 0.449 0.013
f. Comamonadaceae 0.320 0.066 -1.61 0.535 0.006
c. Betaproteobacteria 0.281 0.021 -3.38 0.391 <0.001
f. Neisseriaceae 0.012 0.005 -1.61 0.617 0.017
g. Desulfovibrio 0.473 0.649 0.72 0.261 0.012
g. Campylobacter 0.178 0.060 -0.80 0.309 0.017
f. Succinivibrionaceae 6.07 17.9 2.21 0.335 <0.001
g. Ruminobacter 0.252 0.074 -4.19 0.840 <0.001
g. Succinivibrio 2.12 0.712 -1.35 0.430 0.004
c. Gammaproteobacteria 0.075 0.204 1.74 0.329 <0.001
f. Pasteurellaceae 0.012 0.002 -2.25 0.521 <0.001
g. Acinetobacter 0.045 0.027 -1.97 0.384 <0.001
g. Psychrobacter 0.006 0.000 -2.88 0.815 0.001
Tenericutes g. RFN20 0.913 0.091 -2.92 0.451 <0.001
Verrucomicrobia f. RFP12 0.246 0.019 -2.88 0.522 <0.001
f. WCHB1-25 0.009 0.002 -2.60 0.948 0.012

1Bacterial taxa present in at least 50% of calves and represented at least 0.1% of the bacterial community in at least one calf. 2Sequences that could not be assigned to a genus are displayed using the highest taxonomic level (class, c.; order, o.; family, f.) they could be assigned to. 3FC, fold change; SE, standard error for the log2 fold change estimate.4P-values for treatment effect (weaning strategy) were never significant, and thus, are not presented. Ruminal taxa present but not significantly different between pre- and post-weaned calves are presented in Supplementary Table 1.