Table 1.
Identification of putative AIMs in AtPEX proteins by hfAIM and iLIR.
| Protein | Gene ID | Description | hfAIM1 | xLIR2 | PSSM3 |
|---|---|---|---|---|---|
| AtPEX1 | AT5G08470 | Peroxisomal AAA-ATPases | EDDWEVL* (1, 2, 4, 5) | DDWEVL* | 26 (1.2e-03) |
| ND | STYVDV | 12 (1.1e-01) | |||
| RLGWEDV* (3) | LGWEDV* | 16 (3.0e-02) | |||
| FDEFDSI* (1, 5) | DEFDSI* | 15 (4.2e-02) | |||
| AtPEX6 | AT1G03000 | Peroxisomal AAA-ATPases | VIFFDEL (3) | ND | 5 (1.0e+00) |
| AtPEX10 | AT2G26350 | ZN RING proteins | ND | GVFLLI | 6 (7.4e-01) |
| GEEYCDI (1) | ND | 9 (2.8e-01) | |||
| AtPex3-2 | AT1G48635 | Peroxisome membrane assembly | LQLWDEL (3) | ND | 14 (5.7e-02) |
| AtPex5 | AT5G56290 | Peroxisome targeting sequence binding | GAAWDEV (3) | ND | 15 (4.2e-02) |
| ND | PMFEPV | 10 (2.0e-01) | |||
| AtPex7 | AT1G29260 | Peroxisome targeting sequence binding | AHDFEIL (5) | ND | 14 (5.7e-02) |
| STGWDEL (3) | ND | 18 (1.6e-02) | |||
| AtPex14 | AT5G62810 | Peroxisome docking | RKYFEDL (3) | ND | 7 (5.3e-01) |
| AtPex17 | AT4G18197 | Peroxisome docking | ND | PSFTTL | 11 (1.5e-01) |
| SGEWETL* (5) | GEWETL* | 20 (8.4e-03) | |||
| AtPex19-1 | AT3G03490 | Peroxisome membrane assembly | LKQFEDL (3) | ND | 9 (2.8e-01) |
| AtPEX2 | AT1G79810 | ZN RING proteins | ND | ND | – |
| AtPEX3-1 | AT3G18160 | Peroxisome membrane assembly | ND | ND | – |
| AtPex4 | AT5G25760 | Peroxisome matrix protein import | ND | ND | – |
| AtPEX11A | AT1G47750 | Peroxisome division-proliferation | ND | ND | – |
| AtPEX11B | AT3G47430 | Peroxisome division-proliferation | ND | ND | – |
| AtPEX11C | AT1G01820 | Peroxisome division-proliferation | ND | STFLFL | 12 (1.1e-01) |
| AtPEX11D | AT2G45740 | Peroxisome division-proliferation | ND | STFLFL | 12 (1.1e-01) |
| AtPEX11E | AT3G61070 | Peroxisome division-proliferation | ND | STFLFL | 12 (1.1e-01) |
| AtPEX12 | AT3G04460 | ZN RING proteins | ND | FTYQLL | 12 (1.1e-01) |
| AtPEX13 | AT3G07560 | Peroxisome docking | ND | ND | – |
| AtPEX16 | AT2G45690 | Peroxisome membrane assembly | ND | ND | – |
| AtPex19-2 | AT5G17550 | Peroxisome membrane assembly | ND | ND | – |
| AtPEX22 | AT3G21865 | Peroxisome matrix protein import | ND | ND | – |
1
hfAIM, high fidelity AIM prediction. The numbers in brackets correspond to the hfAIM patterns indicated in Figure 2A.
2
xLIR was predicted by iLIR online website.
3
PSSM values were derived from the iLIR system.
*
stars indicate that the AIMs were predicted by both hfAIM and iLIR; ND, no AIMs predicted by either hfAIM or iLIR.