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. 2016 Apr 22;72(Pt 5):346–355. doi: 10.1107/S2053230X16004623

Table 2. Structure-refinement and validation statistics.

Data set EP–29 EP–30 EP–39 EP–42 EP–50 EP–51 EP–53 EP–91 EP–97
Refinement program PHENIX v.1.9-1692
Resolution limits (Å) 42.7–1.10 39.4–1.31 42.7–1.17 34.7–1.35 39.6–1.25 42.8–1.27 42.7–1.44 34.8–1.28 42.7–1.03
Completeness (%) 96.9 99.5 98.8 99.1 99.7 99.8 97.9 99.8 93.6
Data cutoff [F/σ(F)] 0 0 0 0 0 0 0 0 0
No. of reflections
 Working set 118847 74055 101857 67321 85676 80559 54387 80309 141365
 Test set 6255 3898 5360 3543 4510 4240 2862 2099 7440
R work (%) 11.45 12.75 11.46 11.68 11.27 11.58 12.01 13.80 10.99
R free (%) 12.97 15.83 13.87 14.16 14.02 14.49 15.91 16.40 12.55
DPI (Å) 0.029 0.055 0.034 0.057 0.041 0.046 0.080 0.029 0.023
No. of atoms                  
 Total 2876 2763 2860 2856 2838 2887 2851 2889 2950
 Protein 2470 2459 2472 2468 2464 2458 2459 2473 2488
 Fragment 13 12 10 8 12 28 12 16 12
 Other ligands 64 66 74 54 54 48 50 92 54
 Waters 329 226 304 326 308 353 330 308 396
R.m.s. deviations
 Bonds (Å) 0.007 0.007 0.007 0.009 0.010 0.007 0.008 0.006 0.006
 Angles (°) 1.3 1.2 1.2 1.3 1.4 1.2 1.3 1.2 1.3
Average B factors (Å2)
 Protein 11.8 13.9 12.6 12.8 13.3 12.8 14.8 13.0 12.2
 Fragment 21.4 13.3 23.4 25.1 16.8 34.2 20.8 21.1 16.0
 Other ligands 39.8 37.7 35.1 34.4 34.4 34.5 34.9 40.5 31.2
 Waters 28.2 29.3 28.9 27.9 31.7 28.7 30.1 28.4 29.0
Ramachandran plot
 Outliers (%) 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.06 0.0
 Allowed (%) 1.4 1.7 1.4 1.7 1.7 1.7 2.0 1.4 1.7
 Favoured (%) 98.6 98.3 98.6 98.3 98.3 98.3 98.0 98.6 98.3
PDB code 4y38 4y3j 4ze6 4y3y 4y48 4y4d 4y4g 4zea 4y4j

DPI was calculated using the Online_DPI server (Kumar et al., 2015).