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Performance metrics for the ARCTIC data with the most significant probes removed (top 5 %)
| Method | KS statistic | GIF | |
|---|---|---|---|
| Unadjusted | 0.0758 | 0.9142 | – |
| Ref-based | 0.0508 | 0.9907 | – |
| Ref-free | 0.0296 | 1.1499 | 32 |
| SVA | 0.0362 | 1.0962 | 15 |
| ISVA | 0.1208 | 1.6820 | 39 |
| EWASher | 0.7291 | 1.0164 | – |
| RUV with three components | 0.0906 | 1.2423 | – |
It was not possible to obtain results for the CellCDec and Deconf methods
KS Kolmogorov–Smirnov statistic, GIF genomic inflation factor
