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. 2016 Feb 26;6(5):1251–1266. doi: 10.1534/g3.115.026773

Table 6. The least-squares regressions of frequencies of individuals bearing the reduced networks 70_4R1 and 65_2R4 in our data set and in the HapMap data set.

Network/SNP Dataset Genes Intercept Slope Quadratic Term R2
70_4R1 Ours VDR 0.600 0.0106* –0.0007* 0.74
70_4R1 – Af Ours VDR 0.854 n.s. n.s. 0.18
70_4R1 HapMap VDR 0.215 0.0148** n.s. 0.76
70_4R1 – Af HapMap VDR 0.633 n.s. n.s. 0.51
65_2R4 Ours VDR, MC1R, SLC24A5 0.484 0.0129** –0.0007** 0.85
65_2R4 – Af Ours VDR, MC1R, SLC24A5 0.698 0.0042* n.s. 0.54
65_2R4 HapMap VDR, MC1R, SLC24A5 0.021 n.s. n.s. 0.48
65_2R4 – As HapMap VDR, MC1R, SLC24A5 0.046 0.0183** n.s. 0.90
65_2R4 – As All VDR, MC1R, SLC24A5 0.271 0.0189*** –0.0005** 0.89
65_2R4 – Af – As All VDR, MC1R, SLC24A5 0.693 0.0044** n.s. 0.65
*

Significant with P ≤ 0.05, ** significant with P ≤ 0.01, *** significant with P ≤ 0.001. SNP, single nucleotide polymorphism; n.s., not significant; – Af, the sub-Saharan populations have been excluded; – As, the Chinese and Japanese populations have been excluded.