Skip to main content
. 2016 May 4;11(5):e0154674. doi: 10.1371/journal.pone.0154674

Table 4. Major IPA® pathways and functions involving differentially regulated genes.

Top Down-regulated Canonical Pathways P-value
Activation of IRF by cytosolic pattern recognition receptors 4.04E-09
IL-1 signalling 1.80E-07
Recognition of bacteria and viruses by pattern recognition receptors 5.32E-07
Altered T cell and B cell signalling in rheumatoid arthritis 1.29E-06
B cell development 6.06E-06
Top Upstream Regulators Predicted activation
IFNL1 Inhibited
IFNA2 Inhibited
IL1RN Activated
TCR
IFNG Inhibited
Top Diseases and Biofunctions P-value
Antimicrobial response 8.33E-11–1.21E-11
Inflammatory response 3.99E-03–1.21E-11
Dermatological diseases and conditions 3.32E-03–1.62E-10
Cancer 4.11E-03–6.54E-09
Infectious disease 3.32E-03–1.41E-08
Top Up-regulated Canonical Pathways P-value
Allograft rejection signaling 1.10E-08
OX40 signaling pathway 5.15E-08
B cell development 4.09E-07
Antigen presentation pathway 5.67E-07
Autoimmune thyroid disease signaling 2.03E-06
Top Upstream Regulators Predicted activation
SMC3 Activated
PDLIM2
EBI3 Activated
MYOC
NEUROG1
Top Diseases and Biofunctions P-value
Cancer 3.66E-02–9.72E-08
Gastrointestinal disease 3.66E-02–5.57E-06
Hepatic system disease 3.66E-02–9.11E-06
Endocrine system disorders 3.66E-02–4.62E-05
Metabolic disease 3.66E-02–4.62E-05