Table 4. SNPs statistically associated to the seedless phenotype when analyzing the subset with the MLM K and corresponding range of p-values obtained.

SNPs in bold are those commonly detected when anlyzing the panel. R² is the proportion of phenotypic variance explained by the markers.

SNP	Chr.	Position	Alleles	MAF	p-values	R²
S1_18584608	1	18584608	G/A	12.12%	**	0.60
S1_25846792	1	25846792	G/T	21.21%	***	0.69
S3_22358632	3	22358632	T/A	36.36%	***	0.67
S3_23751148	3	23751148	A/G	13.63%	***	1.00
S4_5366421	4	5366421	C/T	19.70%	***	0.86
S4_5515849	4	5515849	-/T	19.70%	***	0.86
S7_21735706	7	21735706	T/G	22.73%	***	0.84
S7_21735725	7	21735725	T/-	22.73%	***	0.66
S7_21735729	7	21735729	T/C	22.73%	***	0.66
S7_21735767	7	21735767	G/A	22.73%	***	0.66
S7_21742629	7	21742629	C/T	27.27%	**	0.82
S7_21795942	7	21795942	A/G	27.27%	**	0.82
S7_21796003	7	21796003	G/-	50.00%	**	0.77
S7_21796004	7	21796004	A/-	50.00%	**	0.77
S7_21796005	7	21796005	-/T	39.39%	**	0.76
S7_21796006	7	21796006	-/C	39.39%	**	0.76
S9_3878110	9	3878110	A/G	10.61%	***	0.66
S9_3878150	9	3878150	G/T	10.61%	***	0.66
S9_3878151	9	3878151	A/C	10.61%	***	0.66
S9_3878154	9	3878154	G/A	10.61%	***	0.66
S9_3878161	9	3878161	A/G	10.61%	***	0.66
S9_3878238	9	3878238	T/A	10.61%	***	0.66
S11_24122623	11	24122623	A/G	45.45%	**	0.70

For 2039 SNPs markers with MAF>10%, the Bonferroni-corrected thresholds for the p-values were 4.90e-6 (α = 0.01) coded as *** and 2.45e-5 (α = 0.05) coded as **.